Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1463 ATGGAGAGTCCGCATTCGCTGTCTCCTTCTTCCTCCTCGTCTTACTCCTCCGACGGCGGCGGCGTCAGTTTCGAGACGGAGGAGCCGCGAACGCCGCTGGCCGTGCGGCGAGCGCTGAAGCTCCTGAACTCCGGCGAGTCGGAGCTGCGCCTCCAAGCCGCGCGCGACATCCGGCGGCTCACGAAGACGTCCCAACGGTGTCGGCGCCAGCTGGCAGACGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAAGACGAAAAGAATAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCAATAATTAGTTTCCTCAAGTCTCAAAATCTAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGTGCCATTCCTCTTCTTGTGGAGATCCTTAGAGATGGAAGCCCTCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACACACCCTAATAATCTCAGCATCATTCTTGAGACAAACCCAATCCCGTTCATAGTTGATCTTCTTAAAACCTGTAAAAAATCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAATCCTTGGTGGATTATGATGAGGGCAGAACTGCCTTGACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCAATTCTTAGAGAAGGGGTCATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACACCCAAGTCTCAGTCAAAAGCACGCATCCTTTTGCAGTTACTGAGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGACACTCTTGAGAATATAGTATGCAACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAGGCAAAGAAAATGCTGGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGGGCTCTGGTATGCACCCCAAGTGATCTGCCTATAGCTGGCTGTGCTTCTGAAGTTTCATCAAAATGA 1170 0.4872 MESPHSLSPSSSSSYSSDGGGVSFETEEPRTPLAVRRALKLLNSGESELRLQAARDIRRLTKTSQRCRRQLADAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNLNLQESATASLLTLSASSTNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSTHPNNLSIILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARILLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1463 389 Gene3D - 23 372 IPR011989 -
Ssu9g1463 389 PANTHER U BOX DOMAIN-CONTAINING 22 372 - -
Ssu9g1463 389 Pfam Armadillo/beta-catenin-like repeat 105 142 IPR000225 GO:0005515
Ssu9g1463 389 Pfam Armadillo/beta-catenin-like repeat 148 184 IPR000225 GO:0005515
Ssu9g1463 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 157 IPR000225 GO:0005515
Ssu9g1463 389 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 372 - -
Ssu9g1463 389 MobiDBLite consensus disorder prediction 1 21 - -
Ssu9g1463 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Ssu9g1463 389 SUPERFAMILY ARM repeat 34 339 IPR016024 -
Ssu9g1463 389 SMART arm_5 186 228 IPR000225 GO:0005515
Ssu9g1463 389 SMART arm_5 64 102 IPR000225 GO:0005515
Ssu9g1463 389 SMART arm_5 230 270 IPR000225 GO:0005515
Ssu9g1463 389 SMART arm_5 104 144 IPR000225 GO:0005515
Ssu9g1463 389 SMART arm_5 145 185 IPR000225 GO:0005515
Ssu9g1463 389 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1463 Ssu-Chr9 49934742 49938405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1463 35 312 U-box Gene Family AT2G23140 33.571 1.14e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1463 - - gmx:100809684 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1463 9 49934742 49938405 Ssu6g2902 6 67110672 67114422 PCT