Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1462 ATGGCACTGGCCAAAGACCAAAAAATTCCACATGACTCAAGCATGAGCAGCAAGTTTCAGAACTGTACTTTCAATGAGTACAAAAAATCTGTGATACAAGAGGAAGATGGCTCACAGACTACTAATGGTCTCAGCAATGATTCAGCTGCAGCACATTCTCCTCCTCTATGTGGCAGTGGGAAAGGGTATGCTTATAAAGGCAGAAACTATCATCTTGAAGAAGCAGAATCTCTGATTAATTTCAAAGGGTATAGCAATCTCATGCAAGCTGGTGGATCTTTGCTTAGCTTTCAGCAGAACAGGCTGGTTCCTAACAACTGTTACTTGAAAGATGATAGTCAGAAAGAGTACAGTGTTTGGGAGAATAATTTGCATCAAGGCCATAACCACTGGATTCAGACCAGTCCAAGAAGCACTAGAGACATGCGCCTGGTACATAATTTGAAGTGCTTTCAAACTGCTAGTGGCTATAGCACCATAGTCAATAATGCAAAAGAGAAGCAACAAGTCCAAAGTTCATCTGGGTATCTATACTCAGCACCAACTATCCCTAATGATAGTAGCCTCCACAAGTTAGGAGCACAAGAATCGGTTTTGCAAAAGCGCCCTTCTATGGGAGAGAACATGAAAGCTGCCAAGAAACAATGCTCAACTGAGAGCAAAAAGCCAAAGCATAAGTCAAGCCCATCCAAGGATCCTCTAAGTGTGGCTGCCAAGAACCGAAGAGAGAGGATAAGCGAGCGATTGAAGATACTACAAGAACTGGTGCCTAATGTCTCCAAGGTTGATTTGGTTACTATGCTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAACTGCAAGTGAAGGTGTTGGCAACTAATGAATTTTGGCCTGTCCAAGGAGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGCCATCGATGCCATTCTTTCAtcacaaagagagagaagttcAAGTTCGAAGTAG 972 0.4136 MALAKDQKIPHDSSMSSKFQNCTFNEYKKSVIQEEDGSQTTNGLSNDSAAAHSPPLCGSGKGYAYKGRNYHLEEAESLINFKGYSNLMQAGGSLLSFQQNRLVPNNCYLKDDSQKEYSVWENNLHQGHNHWIQTSPRSTRDMRLVHNLKCFQTASGYSTIVNNAKEKQQVQSSSGYLYSAPTIPNDSSLHKLGAQESVLQKRPSMGENMKAAKKQCSTESKKPKHKSSPSKDPLSVAAKNRRERISERLKILQELVPNVSKVDLVTMLEKAISYVKFLQLQVKVLATNEFWPVQGGKPPDISQVKEAIDAILSSQRERSSSSK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1462 323 MobiDBLite consensus disorder prediction 34 49 - -
Ssu9g1462 323 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983
Ssu9g1462 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 287 IPR036638 GO:0046983
Ssu9g1462 323 MobiDBLite consensus disorder prediction 200 240 - -
Ssu9g1462 323 Gene3D - 223 287 IPR036638 GO:0046983
Ssu9g1462 323 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 315 - -
Ssu9g1462 323 SMART finulus 235 284 IPR011598 GO:0046983
Ssu9g1462 323 MobiDBLite consensus disorder prediction 214 229 - -
Ssu9g1462 323 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 315 - -
Ssu9g1462 323 MobiDBLite consensus disorder prediction 34 53 - -
Ssu9g1462 323 CDD bHLH_AtIND_like 230 292 - -
Ssu9g1462 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1462 Ssu-Chr9 49896611 49898120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1462 61 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 43.774 6.83e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu9g1462 HLH 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1462 - - gmx:100810010 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1462 9 49896611 49898120 Ssu6g2901 6 67072256 67073687 PCT