Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1448 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGCGAGAGGTAGAGGACGTGGCAGAGCCCAGTCTGGCCGTGGACCAAGCGGGGCTCTTGGTGCTGGAAGAATGGCTGGTGCTGTTAATGGTAGAAGAATGGCTGGTGCTGGTAATGGTGGGAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCATCTTATGCTATTGCCAAGTCTATTCGCCGAACTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTTCAGGGATTCAAGTAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAATTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCGCTGAGCTTGGAGAGTTGAAGCGTTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATTCGGAATTGCCTATAACTGCTCGTGTGAATGTTACTGGGGTGAATGGGCGGAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGTCAAGCTGGAGGTCCTGGTATGCCTAATCGTGGTGCTGGttgGGGACGTCGTGGTGGCTCAAGGAGTGGTGGCACAAGGAGTGGCGGTGGACGTGGTCGAGGTCGTGGTCGCGGCAGGGGTGGAGGAGGTCGAGGACGTGGAAGAAAGGACACTGAGAAGTCAGCGGCAGACCTTGACAAGGAACTGGAGACCTATCATGCTGAGGCCATGAACATCTCTTGA 885 0.487 MASSLDMSLDDRIKNRSNRARGRGRGRAQSGRGPSGALGAGRMAGAVNGRRMAGAGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQHDLFEDSLRASGIQVVEVGTKLYVSNLDHGVTNEDIRELFAELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPITARVNVTGVNGRRKRTVVMTPRGGQAGGPGMPNRGAGWGRRGGSRSGGTRSGGGRGRGRGRGRGGGGRGRGRKDTEKSAADLDKELETYHAEAMNIS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1448 294 SUPERFAMILY RNA-binding domain, RBD 108 188 IPR035979 GO:0003676
Ssu9g1448 294 SMART FoP_duplication_2 224 294 IPR025715 -
Ssu9g1448 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Ssu9g1448 294 MobiDBLite consensus disorder prediction 264 287 - -
Ssu9g1448 294 MobiDBLite consensus disorder prediction 1 42 - -
Ssu9g1448 294 SMART rrm1_1 115 187 IPR000504 GO:0003723
Ssu9g1448 294 CDD RRM_THOC4 114 188 - -
Ssu9g1448 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Ssu9g1448 294 MobiDBLite consensus disorder prediction 216 294 - -
Ssu9g1448 294 Pfam C-terminal duplication domain of Friend of PRMT1 236 288 IPR025715 -
Ssu9g1448 294 PANTHER THO COMPLEX SUBUNIT 4C 1 293 - -
Ssu9g1448 294 Coils Coil 269 289 - -
Ssu9g1448 294 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 293 - -
Ssu9g1448 294 Gene3D - 108 191 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1448 Ssu-Chr9 49663180 49668536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1448 113 194 Eukaryotic Initiation Factors Gene Family AT2G23350 37.805 9.08e-10 57.4