Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1445 ATGGGAAGGCAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATCAATTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGACTGTTAAGGTGTGGCAAAAGTTGCCGGCTCAGATGGACAAACTACCTGAGGCCAGACCTAAAGAGGGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAGAACCACTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACCCACAAGTCACTTTCCAATACATCTGAGCAAAGTCAAGCCCAACCAGATCAACAACCCCATCAACCATTGCAAGAACAACATCAGCGACAACCTTTCCCAGTTGAGCTGGACTCCAAATTTGAACCTGAAAATGAGCAAAATAAGGAGCCAGAGACTTCCTTTGAATCATCAACCATCACTGAAGCTAGGGAGGAAGACCAAATTATGACACCCCTATTTGACTCAATGGAACTAATGAATGAGTTCTGCACTGATGAAGTTCCCATAATAGAACCCAATGAAATCCTAGTTCCCTCTGCTCCTTCCACTTCACCAACAACTACATCATCTTCAATATCATCTTATTCAAATTTATCCAACTTCCTTGAAGACCTGCTGCTCCCAGATTTTGAGTGGTCTGATAATtgcaatgataataatattgacaataaCAATAGCAGTACGGCCTTGTGGGATGATGACTTTATTAGAAGTTGGaatttgtttattaatgatgatgatgatggtgacaGAAAGCAAGTGTTTGACGCTCCTATCAATCAGTACCCAAGAGTGATCATGGATTCAGAATCTTGGGCCTATGGtttgttttga 969 0.4045 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSNTSEQSQAQPDQQPHQPLQEQHQRQPFPVELDSKFEPENEQNKEPETSFESSTITEAREEDQIMTPLFDSMELMNEFCTDEVPIIEPNEILVPSAPSTSPTTTSSSISSYSNLSNFLEDLLLPDFEWSDNCNDNNIDNNNSSTALWDDDFIRSWNLFINDDDDGDRKQVFDAPINQYPRVIMDSESWAYGLF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1445 322 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 292 - -
Ssu9g1445 322 SMART sant 66 114 IPR001005 -
Ssu9g1445 322 SMART sant 13 63 IPR001005 -
Ssu9g1445 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu9g1445 322 CDD SANT 16 61 IPR001005 -
Ssu9g1445 322 MobiDBLite consensus disorder prediction 125 154 - -
Ssu9g1445 322 Gene3D - 70 152 - -
Ssu9g1445 322 PANTHER MYB TRANSCRIPTION FACTOR 1 292 - -
Ssu9g1445 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu9g1445 322 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Ssu9g1445 322 Gene3D - 11 67 - -
Ssu9g1445 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu9g1445 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu9g1445 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu9g1445 322 CDD SANT 74 112 IPR001005 -
Ssu9g1445 322 MobiDBLite consensus disorder prediction 125 153 - -
Ssu9g1445 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu9g1445 322 MobiDBLite consensus disorder prediction 166 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1445 Ssu-Chr9 49582519 49584629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1445 1 322 MYB Transcription Factor Family AT5G16600 46.761 2.02e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g1445 Myb_DNA-binding 9.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1445 K09422 - gmx:100803624 520.776