Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1431 ATGGTTTTATCTTGGACTAGAAGGAACGTTTTCCGCCGTGCCCGAAAGGGGAAGGAACAAATTCAAGGTGGTGATCTGGAGGTGGAGGTTGTGATCCCCAACCACTTTCGGTGCCCGGTGAGTTTGGAGTTGATGAAAGACCCGGTGACTTTATCAACCGGCATCACCTACGACAGGGTGAGCATTGAGAAGTGGATAGAGGGAGGGAACAAAACCTGCCCCGTCACCAACCAGGCGCTGACAACATTTGACATCATCCCCAACCACGCCATTCGTAGGATGATACAGGATTGGTGCGTGGAAAACAGTTCTTATGGGATTGAAAGGATCCCCACTCCTCGGATTCCTGTCTCCAGCTACGAGGTTTCCGAGACATGTTCCAGGATCTTGTCGGCTTCCCAACGTGGGGATGACGAGAGGTGTCAGGAGTTGGTCGGGAAGATTAAGGTTTGGGGgagagagagtgagaggaaCAAGAGGTGCATAGTAAGTGCTGGTACCGGTGATGTTTTTGCCAATGCCTTTGATTGTTTCTCAAGTGATGACTCTATTGACAAGCATGTGGTTGTTTTGGAGGGGATTTTGGAGGTGCTGACGTGGATGATCCCACTTGGGGAAGAGGGTGTTTCTAAATTGAGTTCACAGGCTTCTTTGAATTCATTGGTTTGGTTTCTCGAGGGGAAAGACCTCGCAGCAAGGCAAGGTGCTGCTTTGTTGCTCAAGGAAGTGTGTGTTCAAGAATTGGCAAAAATTGAGGAGTTGTTGAGGCTTTGGTTAAGATGGTTAGGGAGCCTATTGGGAGTACTGCTACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCATCAGCAGAGAATAGAGAGGGAATTGCTCAGAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTAG 915 0.4743 MVLSWTRRNVFRRARKGKEQIQGGDLEVEVVIPNHFRCPVSLELMKDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQALTTFDIIPNHAIRRMIQDWCVENSSYGIERIPTPRIPVSSYEVSETCSRILSASQRGDDERCQELVGKIKVWGRESERNKRCIVSAGTGDVFANAFDCFSSDDSIDKHVVVLEGILEVLTWMIPLGEEGVSKLSSQASLNSLVWFLEGKDLAARQGAALLLKEVCVQELAKIEELLRLWLRWLGSLLGVLLPRLVWQQFLTWCHQQRIERELLRDLWSWVWFHFC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1431 304 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Ssu9g1431 304 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Ssu9g1431 304 SUPERFAMILY RING/U-box 27 108 - -
Ssu9g1431 304 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Ssu9g1431 304 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 6 254 - -
Ssu9g1431 304 PANTHER WDSAM1 PROTEIN 6 254 IPR045185 GO:0061630
Ssu9g1431 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Ssu9g1431 304 CDD RING-Ubox_PUB 36 78 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1431 Ssu-Chr9 49326183 49327097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1431 27 243 U-box Gene Family AT5G37490 52.995 1.17e-76 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1431 - - gmx:100800966 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1431 9 49326183 49327097 Ssu6g2846 6 66018126 66019433 PCT