Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1420 ATGCCCTTGGAGGGGATTTTCATTGAACCAACTTCAACTTCTACACCTGATCTTTCCCTTCACATAAGCCCACCAAGcacctcctcttcctcttctctgatttgcaacaacaacaacaacaacacatcTGGTGGTGGCATCAATTATGAGGCACACAATTCAACAAGCACAAATTTCCCTTCTCAAGCTCACACTGAGCTTTCTCTGGGAAGGAATTTCAGTGGTGGAGGAGGAGCCCTTGAAGAACCaccaccacacaacaacaacaaccctTATTATCAAACCCAACAGCCCCATTTCCACCATCTTCACCAACATTCTAACACTAGTAATGCTTCAaaagcagcaacaacaacaacgagaAGCACCACAAGTTCCTCTACTCACTTGAATCACATAAATTATGGGGTTTCTTTGCTTGATGTGTCATCAGAAGGATTGAAGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCGTGCCCATGGAACACACAAGAGACAAGGATCATCATGCCAAAATGTGTTTATATCATCATCACATACCTACATATCCCTCTTTGTCCTCTTCTTGTCCTCCTCTGtgttcttctccttcttcttcttcttcttctcctgcACCCTACTTTGCCGTGGCCGCCGCGGCAGGGGGTTTGGATCCCATGTCCTATTTGAACTCAGGTGGATCAACCGCCGCGGCCTATAGGGGTGCCACAGCCACAAGGTTTAATGGAATTGCCGGGGAGGCTTTCAAATCTCATCATCCGTTGCACCATCATCACTCATCATCACACTATGGAGCTGGACTTGGACCCTCTCATGAGGCCTCTTCAGGGTTCATGAGATCAAGGTTTTTGCCCAAGTTGCCAACCAAGAGGAGCATGAGAGCACCAAGAATGCGGTGGACAAGCACGCTCCACGCTCGATTTGTTCATGCTGTTGAGCTTCTCGGTGGCCATGAAaGAGCTACACCAAAGTCAGTTCTTGAGCTCATGGACGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCCGGAGAAGATGACATGTCTCCAATGGGAAGCAGCGGTGGCATGCGTCAATTTTCTGACCAAAGAGGACTTTCGGATCGGCCAGTGCAACAAGATATGGACTACTCTTCGGCCAACACTCTATGGAGTAACTCTTCAAGTAGAGATCCATGGCCACAAACTAGTTCTAACGACATAGATGGTTTCAGACCCCCCATCTTACACTCACAACCAATATCAGGAGGGCATCAAATTCAGGAGTGTGATTCAACCCAACTCAAGAACAGCTTGTCAGGATCAAATTTAGAGTGCAAGAACCCAAGCTTGGAGTTCACATTAGGCAGACCGGATTGGAATGGGAAAGGACAAGCCTAA 1464 0.4303 MPLEGIFIEPTSTSTPDLSLHISPPSTSSSSSLICNNNNNNTSGGGINYEAHNSTSTNFPSQAHTELSLGRNFSGGGGALEEPPPHNNNNPYYQTQQPHFHHLHQHSNTSNASKAATTTTRSTTSSSTHLNHINYGVSLLDVSSEGLKPIKGIPVYHNRSFPFVPMEHTRDKDHHAKMCLYHHHIPTYPSLSSSCPPLCSSPSSSSSSPAPYFAVAAAAGGLDPMSYLNSGGSTAAAYRGATATRFNGIAGEAFKSHHPLHHHHSSSHYGAGLGPSHEASSGFMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRGLSDRPVQQDMDYSSANTLWSNSSSRDPWPQTSSNDIDGFRPPILHSQPISGGHQIQECDSTQLKNSLSGSNLECKNPSLEFTLGRPDWNGKGQA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1420 487 MobiDBLite consensus disorder prediction 8 39 - -
Ssu9g1420 487 SUPERFAMILY Homeodomain-like 298 354 IPR009057 -
Ssu9g1420 487 MobiDBLite consensus disorder prediction 382 430 - -
Ssu9g1420 487 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 487 - -
Ssu9g1420 487 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 487 IPR044847 GO:0000976|GO:0006355|GO:0010158
Ssu9g1420 487 MobiDBLite consensus disorder prediction 87 129 - -
Ssu9g1420 487 MobiDBLite consensus disorder prediction 71 129 - -
Ssu9g1420 487 MobiDBLite consensus disorder prediction 356 447 - -
Ssu9g1420 487 MobiDBLite consensus disorder prediction 1 39 - -
Ssu9g1420 487 Gene3D - 300 357 - -
Ssu9g1420 487 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 301 354 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1420 Ssu-Chr9 49202039 49207636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1420 1 484 G2-like Transcription Factor Family AT5G16560 40.198 2.98e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu9g1420 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1420 - - ccaj:109796302 688.337