Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1411 ATGGTTCTCTCCAAAACCGCCTCCGACACCGACGTGTCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGGACTTCGCTTCCCAGGCAGGGGCTCACTAAATCATGCGCCACCACCATATGtccatattatatttttctccccataaaaataaatgttcatactatttttatGTTCAAGATGCCGGAGGAATCGATACCAAAGGAGGCAGCGTACCAGATCATAAACGACGAGTTGATGTTAGATGGGAACCCAAGGCTGAACCTCGCATCATTTGTGACCACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCTGCCATTAATAAGAACTATGTTGACATGGACGAGTACCCTGTTACCACTGAGCTACAGAATCGGTGTGTTAACATGATAGCTCATCTTTTTAGTGCACCACTAGAGGAGTCTGAGACTGCAGTTGGTGTTGGCACGGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGAAAGTGGCAAAACAGaaggaagaaagaaggaaagcCTTATGACAAGCCCAACATTGTTACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAAGTTAAGCTGCGTGATGGATACTATATAATGGACCCTGAAAAGGCCGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGGGAGTTTGAAGATGTCAAACGCTTAAATGATCTCCTAattgaaaagaataaggaaactggATGGGACACTCCTATTCATGTGGATGCAGCCAGTGGTGGCTTCATTGCCCCATTTATTTACCCAGAGCTTGAGTGGGACTTCCGGTTACCACTAGTGAAGAGTATCAATGTTAGCGGGCACAAGTACGGTCTGGTCTATGCTGGAATCGGTTGGGTTATCTGGAGAAGCAAGGAGGACTTGCCTGAGGAACTCATCTTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGATATAGAAACGTGATGGAAAATTGTAGGGACAACATGTTGGTGCTTAAAGAGGGACTCGAGAAAACAGGGCGGTTTGACATTGTGTCCAAAGACAACGGTGTGCCTTTGGTGGCTTTCACACTGAAAGACCACACCCATTTTGATGAGTTCCAAATCTCTGACCTGCTGAGACGCTTTGGATGGATAGTGCCAGCATACACCATGCCCCCAGATGCTCAGCACGTGACCGTGCTACGTGTCGTCATCAGGGAGGACTTCTCAAGGACCCTCGCGGAGCGCCTTGTGGCTGATGTGGAGAAAGTGCTGCACGAGCTTGACTCACTTCCAGAAAGGGTGATGAGTAGCACCACTGTGGCACTCAGTGGGGAAGAAAATGGCAAAGTAGTGGTTGCCAAGAAGAGTGCTTTGGAGACTCAGAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTGAATGACAAGATGAACGGCGTTTGTTAG 1599 0.4534 MVLSKTASDTDVSVHSTFASRYVRTSLPRQGLTKSCATTICPYYIFLPIKINVHTIFMFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFSAPLEESETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKKEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYIMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMLVLKEGLEKTGRFDIVSKDNGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDSLPERVMSSTTVALSGEENGKVVVAKKSALETQREITAVWKKFVLERKKLNDKMNGVC 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1411 532 PANTHER GLUTAMATE DECARBOXYLASE 1 37 - -
Ssu9g1411 532 PANTHER GLUTAMATE DECARBOXYLASE 56 532 - -
Ssu9g1411 532 PANTHER GLUTAMATE DECARBOXYLASE 1 37 IPR010107 GO:0004351|GO:0006536|GO:0030170
Ssu9g1411 532 PANTHER GLUTAMATE DECARBOXYLASE 56 532 IPR010107 GO:0004351|GO:0006536|GO:0030170
Ssu9g1411 532 Gene3D - 390 477 - -
Ssu9g1411 532 Pfam Pyridoxal-dependent decarboxylase conserved domain 62 410 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ssu9g1411 532 Gene3D - 95 389 IPR015421 GO:0003824
Ssu9g1411 532 Gene3D - 51 94 - -
Ssu9g1411 532 SUPERFAMILY PLP-dependent transferases 57 473 IPR015424 -
Ssu9g1411 532 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 56 473 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1411 Ssu-Chr9 49000669 49015302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1411 1 532 Calmodulin-binding Proteins AT5G17330 78.692 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1411 K01580 - gmx:100796533 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1411 9 49000669 49015302 Ssu6g2834 6 65713955 65720367 PCT