Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1406 atgaatatggCTCCTGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCCACCGACGAAGAACTCGTTTCTTATTACctcaaaagaaagataaatggTCGTAAGATTGAGTTAGAAATCATCCCTGAAGTTGATCTTTATAAGTGTGAGCCATGGGACTTGCCagGGAAGTCATTGTTACCGGGTAAAGATTTGGAGTGGTATTTCTTCAGCCCTCGAGATAGGAAGTACCCAAATGGATCAAGAACAAATCGTGCAACCAAATCTGGATATTGGAAAGCCACAGGGAAAGACCGTAAGGTGAACTCTCAGAGCATTGCAATAGGAATGAAGAAAACCCTAGTTTACTATCGAGGTAGGGCACCACATGGCTGTCGCACAGGTTGGGTTATGCATGAGTACCGTCTTGATGAGACACAGTGCGAAACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGACTGTAGTCATTCAACCAAAAGTTGGAGATCAGCACTATGTTAATGTCACTAGCCATGCAAATCAGATTACAAGTGATCAATCATCAAGCATTGAGCTATACTCTGAAGGAAGAGGTGAAGTTTTAGAGAGCTCAAATTATTTGATGCCGTGGGATACATGCCCTTCCCCAAACATAAATGGGAATACTCTCAATATCAATGGTGGGACAAGGGATAATGGGACATGGTCACACTTCTTATCCGAAGACTTGCTCAATCTTCCAACATCTACTTCTTCGTTTCCCAATTGTGGAGCTATGAGTTACCCTCGATCAAAGGTGGATATAGCCCTAGAGTATGCAAGGATGCAGCATAGGTTTACCATGCCTCCGTTGGAGGTGCAGGACTTCCCACAAGTTGGCATTTCCGAGCTGAAGATGACACAAGCCTCGGGTTCCATGTGTGGAAGTAGAAATGAAACAGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGCTTCCCaggaattaataaatcaatCCAGCTACTCATCACAGGCATTGGGTGCCAATGAAAATTATGCTCCTCATCAAAGTGATTTTACTTTTGTGGTTGGCAACAATTACAATCATGTGAATGATATGAACACCATGGGATTTGTTGACAAAGCATGGGAAGAGCCAAACATAAGATCAATAGAGATCGGGGATCTTGCTGACGAATTCAAGACAGAGAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCCAGCAAAAATATGGAAAAGGGCATTATGGAAGAGCAAAAGATTGTTCCAGTTGagcatatctcaaacttccaaACTAACAGGGAAGACAACGAGATGCAAGTAGGATCTGAGCAACACAACAGTAACATAGAACTCAATGGTACTGACATTGACGATTTCTCAATGGGATTCATCAATGATGACGACCCCAATGAGAACTTCATAAATGAGGGTAACATTGATTATTCAAACTCTACAAACTTTGATGTTGTTGAGGAAACAAAAGTCAATCATGGAATGTTTGTTTCCACTCGTCAAGTAGCTGATACATTCTTTCATCAAATTGCTCCTTCACAAACCGTCAAAGTTCAACTCAATCCAGTTATGGCTAACAATCAATCTATAGAGAATGCTGTAATGGTTAACCAAGGGGGGTCCTCTTTCTTCAGAAAGTTTAAGGCCTATGTGATGGGGAAGCTGATAAAGCCATCAAACACAATAGCAAGTGCCCTTGTATTCATCTTTGCACTTTTGTTGATGCATTGTGTTTATCCGAAGGAGCAAGTGGAAGATTGGAAACCAGACTCCAATTGCTGCTGTGGTTCTAACAGCTTAAAGAAAATGAGGCAACCAGCAGAGACTATCATGTGgaatgaacaagaaaaaatttGGTTTGTTGGTATTAAAAGTGGGAAAGGGTTTAGTGTGGTCTTGAAGAAGATAGGCATTTTCCTCTCCATATCATTGGCTCTTTGTACCATGTGGGCTAACCATGTCATAGTTGACCCTTAG 1995 0.404 MNMAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSIAIGMKKTLVYYRGRAPHGCRTGWVMHEYRLDETQCETASGLQDAYALCRVFKKTVVIQPKVGDQHYVNVTSHANQITSDQSSSIELYSEGRGEVLESSNYLMPWDTCPSPNINGNTLNINGGTRDNGTWSHFLSEDLLNLPTSTSSFPNCGAMSYPRSKVDIALEYARMQHRFTMPPLEVQDFPQVGISELKMTQASGSMCGSRNETDILQEILSVAHASQELINQSSYSSQALGANENYAPHQSDFTFVVGNNYNHVNDMNTMGFVDKAWEEPNIRSIEIGDLADEFKTERMVENLRWVGMSSKNMEKGIMEEQKIVPVEHISNFQTNREDNEMQVGSEQHNSNIELNGTDIDDFSMGFINDDDPNENFINEGNIDYSNSTNFDVVEETKVNHGMFVSTRQVADTFFHQIAPSQTVKVQLNPVMANNQSIENAVMVNQGGSSFFRKFKAYVMGKLIKPSNTIASALVFIFALLLMHCVYPKEQVEDWKPDSNCCCGSNSLKKMRQPAETIMWNEQEKIWFVGIKSGKGFSVVLKKIGIFLSISLALCTMWANHVIVDP 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1406 664 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 403 - -
Ssu9g1406 664 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Ssu9g1406 664 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Ssu9g1406 664 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Ssu9g1406 664 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 3 403 - -
Ssu9g1406 664 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1406 Ssu-Chr9 48907111 48911412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1406 3 655 NAC Transcription Factor Family AT1G65910 44.006 2.41e-162 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu9g1406 NAM 2.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1406 - - gmx:100818019 1154.81