Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1404 ATGTCGCaacaaacaccaacaacactaacCATTCTTATTCTTCTATTCGCACTCCTCACTTCCCCAGCCACCGCTCGTTACTCTTCCCCATCACCCCCCGCCGCGCCGTTTTCCGAATCTACTCCCGACCCTCCTCCACGCGCCGAGTGGCTGTCCGCCAGCGCCACCCACTACGCCGCCAGCGACGCGGCCGGCGGCGCGTGCGGCTACGGCGACCTCCTCGCGGGCGGGTACGGCACGGCCGCCGCCGCCCTCAGCGAGGCCCTCTTCGGCCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCGCGAGGAGGACGCCGCCTTCGACCGCCGCTGGTGCGTCGCCGGCGCCTCCGTCGCCGTCACCGCCGCGAATTTCTGCGCCTCCAACTACGGCTCCGACGCCGAGAGCGTCCCCGGACACTGTAACCCTCCCAAGCAGCACTTCGTGCTCCCCGTTGAGGCCTTCGAGAAAATCGCTATCTGGAAGGCCGGCGCCGGCAACATGCCCGTGGAGTATCGCAGGATACAGTGCAGAAGGGAAGGGGGAATCCGGTTTACAATTACTGGTTCTGGAATCTTCGTTTCCGTACTGATTAGTAATGTGGGTGGCATGGGAGACATTGTTGCTGTGAAGGTTAAGGGTTCAAAAACTAGTTGGCTTCCCATGGGTCGGAATTGGGGTCAGAACTGGCATGTTAATGCGTTACTACAAAACCAACCTCTTTCGTTTGAGGTTACGGGTAGTGATGGGATAACTGTTACATCTTACAATGTTGCTCCCAAGGATTGGAGCTTTGGACACTCTTTTGAAGGCAAGCAATTTGAGTCTTGA 843 0.5848 MSQQTPTTLTILILLFALLTSPATARYSSPSPPAAPFSESTPDPPPRAEWLSASATHYAASDAAGGACGYGDLLAGGYGTAAAALSEALFGRGQICGACFELRCREEDAAFDRRWCVAGASVAVTAANFCASNYGSDAESVPGHCNPPKQHFVLPVEAFEKIAIWKAGAGNMPVEYRRIQCRREGGIRFTITGSGIFVSVLISNVGGMGDIVAVKVKGSKTSWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDGITVTSYNVAPKDWSFGHSFEGKQFES 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1404 280 Pfam Lytic transglycolase 83 176 IPR009009 -
Ssu9g1404 280 PANTHER EXPANSIN-A13 29 279 - -
Ssu9g1404 280 SUPERFAMILY Barwin-like endoglucanases 49 204 IPR036908 -
Ssu9g1404 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 186 IPR007112 -
Ssu9g1404 280 SUPERFAMILY PHL pollen allergen 183 274 IPR036749 -
Ssu9g1404 280 SMART dpbb_1 82 176 IPR007112 -
Ssu9g1404 280 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Ssu9g1404 280 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Ssu9g1404 280 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Ssu9g1404 280 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Ssu9g1404 280 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Ssu9g1404 280 PRINTS Expansin signature 142 159 IPR002963 GO:0009664
Ssu9g1404 280 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Ssu9g1404 280 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Ssu9g1404 280 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Ssu9g1404 280 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Ssu9g1404 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 275 IPR007117 -
Ssu9g1404 280 Gene3D - 187 278 IPR036749 -
Ssu9g1404 280 Gene3D - 40 182 IPR036908 -
Ssu9g1404 280 PANTHER EXPANSIN-A15 29 279 IPR002963 GO:0009664
Ssu9g1404 280 Pfam Expansin C-terminal domain 187 264 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1404 Ssu-Chr9 48837384 48839092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1404 49 280 Expansin Gene Family AT3G03220 68.085 3.80e-117 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1404 - - gmx:100790211 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1404 9 48837384 48839092 Ssu6g2828 6 65551783 65553911 PCT