Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1403 ATGGCGATTCAAGATCAAAATGGATTTAACATATCCCAGGGTGGTCCTCCATTAGGAAATGGAGTATCTTTGAGTTCTGGACTGCATTCTGTCACACATATTCAACTTAATGATCAGTTTTCTTGCGGGAATGACTATGCTCTGAAGgTAAGGAAACCATATACTATCACCaaacagagagagagatggaCAGATGAAGAGCATAAGAAGTTCCTTGAAGCTTTAAAGCTTTATGGCCGGGCCTGGCGACGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTCCGTGACTCTACTGGGAACATTACAAACACAGTGGAGTCAATCGAAATTCCTCCTCCAAGACCGAAACGAAAGCCTATGCATCCTTACCCTCGTAAGCCAGTTGAGACCCCCAATAAGGAAGTTTCGATCCCAAAACAACTTACGAAGTCTAGTTCTCTGAAGTCATCAGATTTTGATCAAGAAAACCAATCTCCAAAATCAGTATTATCTGCAGTTGGTTCAGACAGCCTTGGTTCCTCTGATTCGGACACACCAAATGGAAGTTTGTCCCCAGTGTCATCCATTAGTGGCGTCCACACGGGCAGTTTTACCTGTGCTGAACCCAAAACAACATCATCTGAAGAAGCTGGCCCAAAAGCTGATTCAGTTCATGATGACAAACCTCTTATGATATTTAAGCTTCCCCCAAATGGAAGTGTTTCCATCAAAGAAGACACCACAGAAGAACCTTCTGGTCGGACTTTCAAACTTTTTGGAATGACTTTATTTGTAACAGATGCCTGCAAACCATCTTCAACAATTGAGGCATGCAAACCAATACCTCTAAACATGCGTGCGCAATGTCTTAGCAAGGGGGATGGAAAATTGGAACTTCTTGGCCACAGTACACCATGTGAAACATCAACCATATCCCAGCTAAAGGTGAGAGTGGGACCTGAAATATGTGGGAAAGGATTTGTGCCATATAAAAGGTGCATGGCAGGGAGAGAAAACCAGTCTTCATCTGTGACAGCTGATAGTAGAGAAGAGCAATGCATCCACCTTTCCTTGTAG 1101 0.4223 MAIQDQNGFNISQGGPPLGNGVSLSSGLHSVTHIQLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSTGNITNTVESIEIPPPRPKRKPMHPYPRKPVETPNKEVSIPKQLTKSSSLKSSDFDQENQSPKSVLSAVGSDSLGSSDSDTPNGSLSPVSSISGVHTGSFTCAEPKTTSSEEAGPKADSVHDDKPLMIFKLPPNGSVSIKEDTTEEPSGRTFKLFGMTLFVTDACKPSSTIEACKPIPLNMRAQCLSKGDGKLELLGHSTPCETSTISQLKVRVGPEICGKGFVPYKRCMAGRENQSSSVTADSREEQCIHLSL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1403 366 MobiDBLite consensus disorder prediction 150 226 - -
Ssu9g1403 366 MobiDBLite consensus disorder prediction 126 143 - -
Ssu9g1403 366 SMART sant 59 107 IPR001005 -
Ssu9g1403 366 MobiDBLite consensus disorder prediction 119 238 - -
Ssu9g1403 366 PANTHER SWI/SNF COMPLEX-RELATED 34 284 - -
Ssu9g1403 366 Gene3D - 62 108 - -
Ssu9g1403 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Ssu9g1403 366 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Ssu9g1403 366 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Ssu9g1403 366 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Ssu9g1403 366 CDD SANT 62 105 IPR001005 -
Ssu9g1403 366 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Ssu9g1403 366 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Ssu9g1403 366 PANTHER PROTEIN REVEILLE 7-RELATED 34 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1403 Ssu-Chr9 48824647 48826897 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu9g1403 Myb_DNA-binding 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1403 - - gmx:780539 572.007