Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1402 ATGGGTTCTTGGGCTACAGTATCTGTTCtgattaatcaatttattcCATGGTCTACAACCAATATTGAACCTGCCATGGACTCCAAATTGGGCaccattttttgtaaaatatacagaaatacaaacaaaagaaaactcAGTCTCTCTTTTGCTAGGGATAATTATAAAGTTAGGAGTATTGGTGTGATTAAATCAAGCCAAGATGTATCTTATTTTCAAACTGAACAACAATTGGGAACTTGGGAAGAACCAGATACTGGCAGTGACAGTGAGTGTGATGATGAAGAATATGAGGAAGCTGAAGATGAGAACTTTGGATTTGAAAATGATTCGGAAGAGGAAGGGATGAAGACTTCAGTTGTTACTGATGTTAATATAACTTCAAGGGACAACTATGAAGAACTTATTAAGAAAGAGGTTGAACAACTTTTGGAACCAGAAGAAAGAGCAATATTGCAACAGAATGTTACTCCTAACTTGGAAAAAATATCAACTGCAAAATGGAGCCCGCTGCACACTCTTGTGCTATCAATGCAGATGAGTTGTGTGGATAAGCTTCTTCAAAATGGTGTTGATATTGATTTACCTGATAAGGATTATTTGATCAAACAGGAAGCTCTTACTGCACTTCACAAGGCAATTATAGGTAAAAAAGAAGCTGTGATTAGCCATCTTTTACGGAGAGGTGCAAGTCCTCATGTTAAGGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGATGATtgtgaaattattgatcaagtACAAGGCTGATGTCAATGTTGAAGATAATGAAGGTTGGACCCCCTTGCACGTTGCCATTCAAAGCAGAAATAGAGATATAGCAAAAATTTTGTTAGTCAATGGTGCTGATAAGACAAGGAAAATAAGGACGGAAAAACAGCCCTGGATCTAA 933 0.3526 MGSWATVSVLINQFIPWSTTNIEPAMDSKLGTIFCKIYRNTNKRKLSLSFARDNYKVRSIGVIKSSQDVSYFQTEQQLGTWEEPDTGSDSECDDEEYEEAEDENFGFENDSEEEGMKTSVVTDVNITSRDNYEELIKKEVEQLLEPEERAILQQNVTPNLEKISTAKWSPLHTLVLSMQMSCVDKLLQNGVDIDLPDKDYLIKQEALTALHKAIIGKKEAVISHLLRRGASPHVKDKDGATPLHYAVQVGAKMIVKLLIKYKADVNVEDNEGWTPLHVAIQSRNRDIAKILLVNGADKTRKIRTEKQPWI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1402 310 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Ssu9g1402 310 PRINTS Ankyrin repeat signature 287 301 IPR002110 GO:0005515
Ssu9g1402 310 PRINTS Ankyrin repeat signature 239 254 IPR002110 GO:0005515
Ssu9g1402 310 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Ssu9g1402 310 ProSiteProfiles Ankyrin repeat region circular profile. 238 270 - -
Ssu9g1402 310 MobiDBLite consensus disorder prediction 86 109 - -
Ssu9g1402 310 ProSiteProfiles Ankyrin repeat profile. 271 297 IPR002110 GO:0005515
Ssu9g1402 310 Pfam Ankyrin repeat 208 237 IPR002110 GO:0005515
Ssu9g1402 310 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 86 301 - -
Ssu9g1402 310 MobiDBLite consensus disorder prediction 77 117 - -
Ssu9g1402 310 Pfam Ankyrin repeats (3 copies) 238 301 IPR002110 GO:0005515
Ssu9g1402 310 Gene3D - 239 309 IPR036770 -
Ssu9g1402 310 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Ssu9g1402 310 Gene3D - 128 238 IPR036770 -
Ssu9g1402 310 SMART ANK_2a 271 300 IPR002110 GO:0005515
Ssu9g1402 310 SMART ANK_2a 205 234 IPR002110 GO:0005515
Ssu9g1402 310 SMART ANK_2a 166 195 IPR002110 GO:0005515
Ssu9g1402 310 SMART ANK_2a 238 267 IPR002110 GO:0005515
Ssu9g1402 310 ProSiteProfiles Ankyrin repeat region circular profile. 271 297 - -
Ssu9g1402 310 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 86 301 - -
Ssu9g1402 310 SUPERFAMILY Ankyrin repeat 164 301 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1402 Ssu-Chr9 48811172 48813566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1402 183 297 Ion Channels AT2G25600 29.452 2.31e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1402 - - gsj:114380843 484.567