Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1380 ATGAAAAATGGGAAAGTTGTTGCagtcaaaaaattaattgcaGGAAAATCCAGCAAGATAGATGACGATTTTGAAAGTGAAGTAATGCTTATAAGTAATGTTCATCATAGAAATCTGGTTCGGCTTCTTGGTTGTTGCAGTAAAGGCCAAGAAAGAATCCTTGTTTACGAATACATGGCAAACAACAGCCTTGACAAATTCTTATTTGGTAAAAGAAAAGGTTCCCTCAACTGGAAACAAcgatatgatataattttgggCACAGCAAGGGGATTGGCCTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATTAAGAGTGGCAATATCCTCTTGGATGAAGAACTTCAGCCCAAAATTTCTGATTTTGGGTTGGTGAGGCTCCTACCATGGGACCAATCTCATCTTACCACAAGATTTGCAGGAACAttGGGATACACAGCACCTGAGTATGCACTCCATGGTCAATTATCAGAAAAGGCTGATACATACAGTTATGGAATTGTAGTCCTCGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGGtggttgatgatgatgatgatgaatatCTTCTTCGACGAGCATGGAAGTTGTATGAGAGAGGCATGCACTTGGAGTTGGTGGACAAAAGCTTAGATCCTAATAACTATGATGCAGAAGAAGTGAAGAAAGTCATAGATATTGCTTTGTTGTGCACTCAAGCATCGGCTGCAATGAGGCCAGCCATGTCTGAAGTAGTAGTCCTACTTAGTAGCAATGAGTTAGTTGAGCGTATGAGACCTTCAATGCCTATCTTTATTGAGTCAAAATTAAGGCCCCACAGAGATATCTTTGCTTCAGCTGGTTCTTCTACATCTAATGCTACTGCCTCTAATTCTATAGTACCTACTCGATGA 912 0.3728 MKNGKVVAVKKLIAGKSSKIDDDFESEVMLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDKFLFGKRKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKSGNILLDEELQPKISDFGLVRLLPWDQSHLTTRFAGTLGYTAPEYALHGQLSEKADTYSYGIVVLEIISGQKSTDVKVVDDDDDEYLLRRAWKLYERGMHLELVDKSLDPNNYDAEEVKKVIDIALLCTQASAAMRPAMSEVVVLLSSNELVERMRPSMPIFIESKLRPHRDIFASAGSSTSNATASNSIVPTR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1380 303 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
Ssu9g1380 303 SUPERFAMILY Protein kinase-like (PK-like) 2 270 IPR011009 -
Ssu9g1380 303 ProSiteProfiles Protein kinase domain profile. 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1380 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 103 115 IPR008271 GO:0004672|GO:0006468
Ssu9g1380 303 Gene3D Transferase(Phosphotransferase) domain 1 60 269 - -
Ssu9g1380 303 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 300 - -
Ssu9g1380 303 SMART serkin_6 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1380 303 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 300 - -
Ssu9g1380 303 PIRSF ILK 1 265 - -
Ssu9g1380 303 Pfam Protein tyrosine and serine/threonine kinase 4 253 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1380 Ssu-Chr9 48331653 48332883 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1380 1 261 Receptor kinase-like Gene Family AT1G56120 52.107 1.28e-86 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu9g1380 PK_Tyr_Ser-Thr 5.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1380 - - gmx:100777409 523.087