LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu9g1378	ATGGTGGTGCAACGACTCAATCTCCTAGCCTTAACCTTCTTGATGTTGTGGTCATGGTGGAGCCTTGAGGGTGCACTAGGGGACCCTCAAATTCGTTTACTCAACAAGGGGTGTAGCCAATACAACGCAACCGACTTGTCCAACTTCTACCAAAATCTAAACGCAACTTTGGATGACCTTAGAGCGCAGGTTAGCAACCAAAGCAGGCACTTTGCCACGGCTGAAGAAGCCAAGGGAGCAAACCCTGTCTATGCCATGTTTCAATGTAGGAACTACCTCTCTAAGGCTGACTGCGTCGCCTGCTTCGCCGTTGCCACCGCCCAAATCGGCAATTGCTCCGCCGGAGCCAACGGTGCCCGGGCCATTTATGATGGTTGCTTCCTTAGGTATGAGAGCAATGGCTTCTTTGACCAGACCACTCTGCCTGGCAACAGTATGCTTTGTGGAAATCAGACTGCCGTTGGAGCCACTGCTTTTAATACAACTGCACAGAAAGTACTAAATGACTTGCAAATTGCAACACCCAAAATTACTGGTTTCTTTGCAGCTACCAAGACACTAGTGGCTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTGTCACAGAGAGTGGTTGTCTGGATTGCCTCACAGTTGGATACAACAACATACAGATTTGTTTACCCAATACAGATGGCAGAGCATTTGATGCTGGATGTTTTATGAGATACTCGGAGACAGCCTTTTTTGCTGATAACCAGACCATTGATATCACACCCTTTCTGGAACAAGGAGGTTCAAGCAAGAAGGGAGCCATTATTGGTGGTGTTGTTGGAGGTGTAGGTCTTGTTGTGATCCTCCTTGCACTATTTGCCTTTCTTAGACGGTACAAGAAACCCAAGAAGGTTCCTAGAGGTGACATATTGGGAGCAACTGAATTGAAAGGTCCAGTTACGTATAGGTATAAGGATTTGAAGACTGCAACCAAAAATTTCAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGTAAAGTAGTTGCAGTCAAGAAATTAAGTTTAGGCCAATCCGGGAAGATGGATGAACAATTTGAAAGTGAAGTCAAGCTTATATGTAATGTTCATCATAAGAATCTAGTTCGACTTCTTGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAACAGCCTGGACAGATTCTTATTTGgTGAAAAGAAGGGTTCTCTCAATTGGAAACAAAGACATGATACAATTTTAGGCACAGCAAAGGGTTTGGCCTATCTACATGAGGATTTCCATGTTTGCATCATACATAGGGATATAAAGACAAGCAATATCCTCTTGGATGATGATATGCAGCCCAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGAGGACCAATCTCATCTTAGTACAAGATTTGCTGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGTTATCAGAGAAGGCTGATACCTACAGCTTTGGTGTTGTAGTCCTGGAAATCATAAGTGGCCAAAAGAGCAGTGAATTGAGGGCAGATGCTGAAGGTGAATTCCTCCTTCAAAGGGCATGGAAACTATATGAGGAAGATATGCATTTGGAGTTGGTTGACAAGACATTGGACCCTGATGACTATGATGCAGAAGAAGTGAAGAAAATTATAGAGATTGCCTTACTTTGCACTCAAGCATCAGCTGCTGCAAGGCCAACAATGTCTGAAGTAGTAGTCTTACTCAAAAGCAAGAATTCACTGGGGAATATGAGGCCTTCTATGCCGGTCTTTGTTGAATCTAACTTTAGGACTCGGGCAGACACCTCTACCTCAACTGGTTCCTCTACATCTAATGCTACTGCTTCCATTTCTATGCTCTCAGGTCGATGA	1941	0.4379	MVVQRLNLLALTFLMLWSWWSLEGALGDPQIRLLNKGCSQYNATDLSNFYQNLNATLDDLRAQVSNQSRHFATAEEAKGANPVYAMFQCRNYLSKADCVACFAVATAQIGNCSAGANGARAIYDGCFLRYESNGFFDQTTLPGNSMLCGNQTAVGATAFNTTAQKVLNDLQIATPKITGFFAATKTLVAGGAIYAIAQCAETVTESGCLDCLTVGYNNIQICLPNTDGRAFDAGCFMRYSETAFFADNQTIDITPFLEQGGSSKKGAIIGGVVGGVGLVVILLALFAFLRRYKKPKKVPRGDILGATELKGPVTYRYKDLKTATKNFSDENKLGEGGFGDVYKGTLKNGKVVAVKKLSLGQSGKMDEQFESEVKLICNVHHKNLVRLLGCCSKGQERILVYEYMANNSLDRFLFGEKKGSLNWKQRHDTILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDDMQPRIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSFGVVVLEIISGQKSSELRADAEGEFLLQRAWKLYEEDMHLELVDKTLDPDDYDAEEVKKIIEIALLCTQASAAARPTMSEVVVLLKSKNSLGNMRPSMPVFVESNFRTRADTSTSTGSSTSNATASISMLSGR	646

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu9g1378	646	CDD	STKc_IRAK	333	599	-	-
	Ssu9g1378	646	Gene3D	Transferase(Phosphotransferase) domain 1	404	610	-	-
	Ssu9g1378	646	MobiDBLite	consensus disorder prediction	623	646	-	-
	Ssu9g1378	646	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	21	643	-	-
	Ssu9g1378	646	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	21	643	-	-
	Ssu9g1378	646	Pfam	Protein tyrosine and serine/threonine kinase	330	596	IPR001245	GO:0004672\|GO:0006468
	Ssu9g1378	646	ProSitePatterns	Protein kinases ATP-binding region signature.	333	356	IPR017441	GO:0005524
	Ssu9g1378	646	Pfam	Salt stress response/antifungal	38	132	IPR002902	-
	Ssu9g1378	646	Pfam	Salt stress response/antifungal	153	241	IPR002902	-
	Ssu9g1378	646	Gene3D	-	144	244	IPR038408	-
	Ssu9g1378	646	Gene3D	-	30	135	IPR038408	-
	Ssu9g1378	646	SUPERFAMILY	Protein kinase-like (PK-like)	310	598	IPR011009	-
	Ssu9g1378	646	ProSiteProfiles	Gnk2-homologous domain profile.	31	135	IPR002902	-
	Ssu9g1378	646	Coils	Coil	43	77	-	-
	Ssu9g1378	646	Gene3D	Phosphorylase Kinase; domain 1	300	403	-	-
	Ssu9g1378	646	ProSiteProfiles	Protein kinase domain profile.	327	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu9g1378	646	ProSiteProfiles	Gnk2-homologous domain profile.	141	244	IPR002902	-
	Ssu9g1378	646	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	448	460	IPR008271	GO:0004672\|GO:0006468
	Ssu9g1378	646	SMART	serkin_6	327	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu9g1378	Ssu-Chr9	48307369	48313632	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu9g1378	9	646	Receptor kinase-like Gene Family	AT1G70520	35.802	1.18e-125	384

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Ssu9g1378		PK_Tyr_Ser-Thr	4.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu9g1378	-		-	gmx:100811953	1106.66