Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1374 ATGTGTTTGTGTGATTGGTTGATATATATACTAGTGTCTTTGTATAAAAGAGGAAAACAAAAGAAGGTAAAGCTTGATGATATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCCTGGTGTCCCTACCAACTGCGGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGcagGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTATCCTAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCCCAAATGACATTGCAGCCGTTGACTCCGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATTTGGTACTTTTACCTCTTTAAGCAACCTTTTCTTACCCCCTGAATGCTGGAGATTGATTCTTTCCATgaatGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTAATGCCGTCATCAGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTGTTCTATAATCCTAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATTACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCGTCATTATTTCCCCTCAGACTGAAACGTCCATGGCATCCTGGCACCTCATCTTTgcatgATGGGAGAGATGAAGCAACAAATGGGCTAATGTGGCTGAGAGGTGGGCCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCCAGGAGCTGGTATGTTGCCCTGGACGCAGCAGAGACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTGCCAAGCCATGTTGGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATGTTCAACAGCCTTTCCACTATCTTCAACAATCAGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATTGGTGTCTTCTAATATGCTGCAGCCACAAGTCCATGTAATGACAGACCTGTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATACTTATCAAGACGCACTCTTAATTCCGAGTGATCAGCTCCATCAGAGACAACACTCCGGTGTTCCTTCACCATCATATTCAAAACCAGATTTCTTGGACTCGAGCATGAAGTTCCCTGCTTCAGTTTCCCCCAGACAAAACGTGCTTAGTTCACTTTGTCCTGAAGGAAGTGGCAGTCTCTTGAATTTATCAAGAAGCAGTCAGTCCTTGCTGACCGAACAGTTACCCCAACAACAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCCTATGGAAGCACTACATCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATTGTAACTCAGATGCCCAAAATCCTACACTCTTTGGTGTCAATATTGATTCATCTGGCCTTCTCCTCCCATCACTGCCCCTGGTTTCACCACCTTGTCCGGTGGCACTAATTCATCAACAATGCCATTAG 1953 0.445 MCLCDWLIYILVSLYKRGKQKKVKLDDMKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPDSQNDTFLLQAGVYLLVPRDLWLEILCFSFGTFTSLSNLFLPPECWRLILSMNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGRDEATNGLMWLRGGPVDQGLNSLNFPGAGMLPWTQQRLDPTLLGNDQNQQCQAMLAAGLQNLGSGYLMKQQMMNVQQPFHYLQQSGNSNSPLQLQQQQAIQQLVSSNMLQPQVHVMTDLSQHLLQKPHNNQEVQAQQQQHTYQDALLIPSDQLHQRQHSGVPSPSYSKPDFLDSSMKFPASVSPRQNVLSSLCPEGSGSLLNLSRSSQSLLTEQLPQQQWTQKYAPVQVNAYGSTTSHAQYSGKDSAMVLPHCNSDAQNPTLFGVNIDSSGLLLPSLPLVSPPCPVALIHQQCH 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1374 650 MobiDBLite consensus disorder prediction 509 528 - -
Ssu9g1374 650 Gene3D - 260 332 - -
Ssu9g1374 650 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 182 632 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu9g1374 650 Pfam Auxin response factor 222 305 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu9g1374 650 MobiDBLite consensus disorder prediction 509 526 - -
Ssu9g1374 650 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 145 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu9g1374 650 PANTHER AUXIN RESPONSE FACTOR 28 145 - -
Ssu9g1374 650 PANTHER AUXIN RESPONSE FACTOR 182 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1374 Ssu-Chr9 48237782 48243595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1374 180 632 B3 DNA Binding Superfamily AT5G37020 60.259 1.62e-155 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1374 - - gmx:100814479 988.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1374 9 48237782 48243595 Ssu6g2811 6 65295871 65305938 PCT