Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1373 ATGCAAGATTCATCAGAGTTGCAAAGTGCAGGGCATGTTGACCCACAAAACCAGAGTCAAACTTTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCGGGAGAATCCCTTGCTCTAAGTACAGGACAAAGGCTAAATGGCACTGGTGCTGAATCTCAGGACATTGTTTCTGGACCCCCATCAATTGGCTCACTTGAGTACTGA 441 0.458 MQDSSELQSAGHVDPQNQSQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAGESLALSTGQRLNGTGAESQDIVSGPPSIGSLEY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1373 146 ProSiteProfiles PB1 domain profile. 20 104 IPR000270 GO:0005515
Ssu9g1373 146 SUPERFAMILY CAD & PB1 domains 15 94 - -
Ssu9g1373 146 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 131 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu9g1373 146 Gene3D - 16 109 - -
Ssu9g1373 146 PANTHER AUXIN RESPONSE FACTOR 1 131 - -
Ssu9g1373 146 Pfam AUX/IAA family 16 105 IPR033389 -
Ssu9g1373 146 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1373 Ssu-Chr9 48237071 48237746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1373 1 111 B3 DNA Binding Superfamily AT5G37020 76.991 2.06e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ssu9g1373 AUX_IAA 3.2e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1373 - - gmx:100784373 278.1