Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1366 ATGCATAGTGGACAAGAATTTGCCAAGGGAGGTGCTGTCTGGGATATTTTTCGGAGGCAAGACATGCACAAGCTTGACGAATACCTTAGGAAGCATTGTAGGGAATTCAGGCATCTCTGTTGTTCTCAAGTGGATGAGGTTTTTCACCCCATTCATGATCAAGTTTTTTATCTGACTTCTCATCATAAAAGGAAGCTCAAGGAAGAATTTGGAATTGAACCTTGGACTTTTATACAAAACCTTGGTGAGGCTGTTTTTATACCTGCTGGGTGTCCCCATCAAGTTAGAAACTTAAAGTCGTGCATAAAGGTTGCTCTAGATTTTGTCTCTCCTGAAAATATCCAAGAGTGTATTCGTCTGACCGAGGAATTTCGTACTCTTCCCCCAACCCATAAAGCAAAGGAAGACAAACTTGGGGTGAAGAAAATGTGTCTCCATGCATTAAGCAAGGCTGCAGACGATTTGGAGCAGCTCGAAGGACGAGTAGAGTAG 492 0.4268 MHSGQEFAKGGAVWDIFRRQDMHKLDEYLRKHCREFRHLCCSQVDEVFHPIHDQVFYLTSHHKRKLKEEFGIEPWTFIQNLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIQECIRLTEEFRTLPPTHKAKEDKLGVKKMCLHALSKAADDLEQLEGRVE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1366 163 Gene3D Cupin 1 134 - -
Ssu9g1366 163 SMART cupin_9 2 125 IPR003347 -
Ssu9g1366 163 SUPERFAMILY Clavaminate synthase-like 10 160 - -
Ssu9g1366 163 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 6 157 IPR045109 GO:0032454|GO:0033169
Ssu9g1366 163 Pfam JmjC domain, hydroxylase 12 108 IPR003347 -
Ssu9g1366 163 ProSiteProfiles JmjC domain profile. 1 125 IPR003347 -
Ssu9g1366 163 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLASE 2, ISOFORM A 6 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1366 Ssu-Chr9 48160211 48162334 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu9g1366 JmjC 1.3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1366 K15601 - gmx:100808936 305.064