Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1346 ATGGAGACTATGCCCTCCGTTCTCAAGAAATACTTTGGGTTTTCAGATTTTCGGCCTTATCAGAGAGATGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGcTATCAGGTACCTCCTTTGGTTGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTCATATCACTGATGCAAGACCAGGTGATGGCTTTGAAACAACGGGGCATTAAAGCTGAATACCTTGGAAGTGCTCAGAAGGATTCCATGGTGCACTCTAAAGCTGAACGTGGCCAATTTGAAATTCTGTTCATGACTCCTGAGAAGGCATGCACAATTCCTAGCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCAGAATGGGGACATGATTTTAGGGTGGAGTACAAGCAATTAGACAAGTTACGTGGGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCCACTGCTACTGAAAAGGTTCGATTTGACATCATCAGTTCCCTGAAGATGAATAATCCTTATGTTATGGTTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTACTTAACCGTGGACAATCTTTTATTGATGAGCTTGTTCGAGAAATTTCAAAAGAAGTTGCTAGTGGTGGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTGCAGAAGCAGGCATTGAGGCAGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTATTGTGGAGATTTAAAATCAgaaaaacaaagaaaagctGTTATGGAGTCATTACTGGCTGCTGAACGCTATTGTGTGCTGACAACTTGTAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTTTCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAGTCTCAAAGGAGCGTGACATGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCGTGCAGGGGCAAATGGGGCCTTAATATGCCCATTGATGTCCTGCGCGGGTCCCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGACTGTTAGTGACATATACAGAACTATAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCCTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGAATTCAAAACTTTATCCACTTCAGAATCAGAGGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTCTATGTGGTGATCAAACGATCAGGAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAATGCAATATGGAGATCATTTTCTTCAAGTTATTCAGAAACTGTCACAAGGATTAAACTTATCATTGGATGGGGAAGCAAGGGTCACGACAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCCAGTAACCAACAAATCCAAGAAGTTGACATCGGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCGTTCTATTAATGAGATTGCTAACTGTCCAGGTAGATCAGCTCCTATCAAAGAACAAACTGTTGCTGACTATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGACTAGATTCTGTGAGATGATAGGAGTGACAAAAGAGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAGcctataaaaaatgaattgccAGAAGATATAAGTTATCTGCACATCAAGACTTATTTGTCAATGCGAAACTGTGGAATATCTTTAGAAGCACATCAATCTGGAAGTCACCAAACTAGGAAAGATGATGAACCTGCACATAATGCTTCAAATCTGTCAGATCCTACTTTAGAAATGAGCCACGTGGAAAGGCATTGTGAAGACAGCATTTTTGCCGAAAGTTCAATGGAAAAATGCGACTTAGAAATTGATGAGGTACCCTCTCTACCTGTCAATGGTTCTGAGGTACAGAAGCATCCATTAGCCAGTGAAGGGGAATTCACAAGCAAACGACAAAAAGTCAGTGAAACGAAGGAAGCCAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACCTTGATGAAGGGGCTACATTGAGCGATGTTTTGGAACACTTCAATGGATCCAGTGAAGATTCCGTGGTTGAACTGCTAAATTGCCTTGAGTGTGACTTTTCAATATATAGGAAAGGGAACATGTTTAGGGTTATGTGA 2754 0.4001 METMPSVLKKYFGFSDFRPYQRDVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDSMVHSKAERGQFEILFMTPEKACTIPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPFVGLTATATEKVRFDIISSLKMNNPYVMVGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVASGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDLKSEKQRKAVMESLLAAERYCVLTTCRRKFLLEYFGEKFSADRCGNCDNCKVSKERDMSREAFLLMACIHSCRGKWGLNMPIDVLRGSRAKKILDAQFDKLPLHGLGKNYPANWWKALGHQLISQGYLKETVSDIYRTISVSSKGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQEEFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYALCGDQTIRKIALTRPSTKARLANIDGVNQHLVMQYGDHFLQVIQKLSQGLNLSLDGEARVTTASLQTNEVRKVSPVTNKSKKLTSAKFEAWKMWHEDGRSINEIANCPGRSAPIKEQTVADYLLEAAQEGLPFDWTRFCEMIGVTKEIISEIQGAISKVGSTDKLKPIKNELPEDISYLHIKTYLSMRNCGISLEAHQSGSHQTRKDDEPAHNASNLSDPTLEMSHVERHCEDSIFAESSMEKCDLEIDEVPSLPVNGSEVQKHPLASEGEFTSKRQKVSETKEANSTKLKATESSVVEWLKNLDEGATLSDVLEHFNGSSEDSVVELLNCLECDFSIYRKGNMFRVM 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1346 917 Pfam RQC domain 403 500 IPR018982 GO:0006260|GO:0006281|GO:0043138
Ssu9g1346 917 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 457 IPR004589 GO:0004386|GO:0006310
Ssu9g1346 917 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Ssu9g1346 917 MobiDBLite consensus disorder prediction 835 854 - -
Ssu9g1346 917 Pfam Helix-turn-helix domain 658 754 IPR029491 -
Ssu9g1346 917 SUPERFAMILY "Winged helix" DNA-binding domain 403 501 IPR036390 -
Ssu9g1346 917 SMART RQC_2 406 510 IPR018982 GO:0006260|GO:0006281|GO:0043138
Ssu9g1346 917 Gene3D - 402 524 IPR036388 -
Ssu9g1346 917 Pfam RecQ zinc-binding 350 400 IPR032284 -
Ssu9g1346 917 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Ssu9g1346 917 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 370 IPR001650 -
Ssu9g1346 917 ProSiteProfiles HRDC domain profile. 542 622 IPR002121 GO:0003676
Ssu9g1346 917 SMART ultradead3 13 208 IPR014001 -
Ssu9g1346 917 MobiDBLite consensus disorder prediction 766 793 - -
Ssu9g1346 917 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 4 684 - -
Ssu9g1346 917 SUPERFAMILY HRDC-like 541 617 IPR010997 GO:0000166|GO:0044237
Ssu9g1346 917 Gene3D - 1 198 IPR027417 -
Ssu9g1346 917 Gene3D HRDC domain 540 621 IPR044876 -
Ssu9g1346 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Ssu9g1346 917 MobiDBLite consensus disorder prediction 838 854 - -
Ssu9g1346 917 CDD DEXHc_RecQ 6 199 - -
Ssu9g1346 917 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Ssu9g1346 917 Pfam HRDC domain 547 612 IPR002121 GO:0003676
Ssu9g1346 917 Gene3D - 200 401 IPR027417 -
Ssu9g1346 917 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 684 - -
Ssu9g1346 917 SMART hrdc7 542 622 IPR002121 GO:0003676
Ssu9g1346 917 SMART helicmild6 245 326 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1346 Ssu-Chr9 47937440 47948174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1346 235 342 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 2.04e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1346 K03654 - gmx:100797777 1674.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1346 9 47937440 47948174 Ssu9g1346 9 47937440 47948174 ECH