Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu9g1331 | ATGGGGAGAAGACCGGCGAGGTGTTACCGGCAGATAAAGAACAAGCCGTACCCGAAGTCGCGGTTCTGCCGCGGCGTTCCGGACCCGAAGATTCGGATCTACGACACGGGGATGAAGAAGAAGGGGGTGGACGAGTTCCCCTTGTGCGTGCACCTGGTGTCGTGGGAGAAGGAGAACGTGTCGAGCGAGGCCCTGGAGGCGGCGCGCATCGCGTGCAACAAGTACATGGCCAAGTTCGCCGGCAAGGACGCGTTCCACCTGCGCGTCAGGGCGCACCCCTTCCACGTGCTCCGCATCAACAAGATGCTATCGTGCGCCGGGGCGGACAGGCTCCAGACCGGGATGAGGGGCGCGTTCGGGAAACCGCAGGGGACGTGTGCCAGGGTCAACATCGGCCAGGTGCTGCTCTCGGTTAGGTGTAAGGATAGTCACGGCCATCACGCTCAGGAGGCTCTTCGCCGTGCCAAATTCAAGTTCCCCGGTCGCCAGAAGATCATTGTTAGCAGAAAGTGGGGATTTACAAAGTTCAATCGAAGTGAGTATTTGAAGTTGAAGTCTGAGAACAAAATTGTGCCGGATGGGGTCAATGCCAAGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGAGCCTGGAAGAGCATTCTTACCAGCTACTGCTTAG | 663 | 0.5822 | MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDTGMKKKGVDEFPLCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRAHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSEYLKLKSENKIVPDGVNAKVLGCHGPLANREPGRAFLPATA | 220 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu9g1331 | 220 | TIGRFAM | uL16_euk_arch: ribosomal protein uL16 | 1 | 174 | IPR001197 | GO:0003735|GO:0005840|GO:0006412 | |
Ssu9g1331 | 220 | Gene3D | Ribosomal protein L10e/L16 | 1 | 215 | IPR036920 | GO:0003735|GO:0005840|GO:0006412 | |
Ssu9g1331 | 220 | CDD | Ribosomal_L16_L10e | 41 | 166 | IPR016180 | GO:0003735|GO:0005840|GO:0006412 | |
Ssu9g1331 | 220 | ProSitePatterns | Ribosomal protein L10e signature. | 108 | 129 | IPR018255 | GO:0003735|GO:0005840|GO:0006412 | |
Ssu9g1331 | 220 | PANTHER | 60S RIBOSOMAL PROTEIN L10-LIKE | 1 | 219 | - | - | |
Ssu9g1331 | 220 | PIRSF | RPL10a_RPL10e | 1 | 182 | IPR001197 | GO:0003735|GO:0005840|GO:0006412 | |
Ssu9g1331 | 220 | SUPERFAMILY | Ribosomal protein L16p/L10e | 4 | 173 | IPR036920 | GO:0003735|GO:0005840|GO:0006412 | |
Ssu9g1331 | 220 | Pfam | Ribosomal protein L16p/L10e | 12 | 166 | IPR016180 | GO:0003735|GO:0005840|GO:0006412 | |
Ssu9g1331 | 220 | PANTHER | 60S RIBOSOMAL PROTEIN L10 | 1 | 219 | IPR001197 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu9g1331 | Ssu-Chr9 | 47707861 | 47709891 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu9g1331 | 1 | 220 | Cytoplasmic Ribosomal Protein Gene Family | AT1G66580 | 86.818 | 6.26e-145 | 401 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu9g1331 | K02866 | - | gmx:100779884 | 442.195 |