Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1331 ATGGGGAGAAGACCGGCGAGGTGTTACCGGCAGATAAAGAACAAGCCGTACCCGAAGTCGCGGTTCTGCCGCGGCGTTCCGGACCCGAAGATTCGGATCTACGACACGGGGATGAAGAAGAAGGGGGTGGACGAGTTCCCCTTGTGCGTGCACCTGGTGTCGTGGGAGAAGGAGAACGTGTCGAGCGAGGCCCTGGAGGCGGCGCGCATCGCGTGCAACAAGTACATGGCCAAGTTCGCCGGCAAGGACGCGTTCCACCTGCGCGTCAGGGCGCACCCCTTCCACGTGCTCCGCATCAACAAGATGCTATCGTGCGCCGGGGCGGACAGGCTCCAGACCGGGATGAGGGGCGCGTTCGGGAAACCGCAGGGGACGTGTGCCAGGGTCAACATCGGCCAGGTGCTGCTCTCGGTTAGGTGTAAGGATAGTCACGGCCATCACGCTCAGGAGGCTCTTCGCCGTGCCAAATTCAAGTTCCCCGGTCGCCAGAAGATCATTGTTAGCAGAAAGTGGGGATTTACAAAGTTCAATCGAAGTGAGTATTTGAAGTTGAAGTCTGAGAACAAAATTGTGCCGGATGGGGTCAATGCCAAGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGAGCCTGGAAGAGCATTCTTACCAGCTACTGCTTAG 663 0.5822 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDTGMKKKGVDEFPLCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRAHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSEYLKLKSENKIVPDGVNAKVLGCHGPLANREPGRAFLPATA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1331 220 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ssu9g1331 220 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Ssu9g1331 220 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ssu9g1331 220 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Ssu9g1331 220 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Ssu9g1331 220 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ssu9g1331 220 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Ssu9g1331 220 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ssu9g1331 220 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1331 Ssu-Chr9 47707861 47709891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1331 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.818 6.26e-145 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1331 K02866 - gmx:100779884 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1331 9 47707861 47709891 Ssu9g1331 9 47707861 47709891 ECH