Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1330 ATGTATCTTTCAAAGAGTTTCAAGCATGAAGTTGTTTTCATCTTGTGTTTCTGCTACTATTTTCTACATGCTGCTGGGCAGAATAACATAACTGACAACACTGAAGTTGAAGCATTGAAAGCCATTAAGAGTAGTTTGATTGATCCTAATGGAAATTTGAGCAATTGGAATCGTGGAGACCCATGTACATCAAGGTGGAAAGGAGTTTTGTGCTTCAATGAAACAAAAGAGGATGGCTATCTACATGTTCAAGAATTGCAATTACTGAGGCTGAACTTGTCCGGAACTTTGGCACCAGATCTTGGCAAATTAACTTATATGGAAAGATTGAACTTTATGTGGAACAACATAAGTGGGAGTATTCCGAAGGAAATTGGCAATATCACATCTTTGATACTCTTgCTCCTGAATGGAAATAATTTAACAGGTCCACTACCAGAGGAGCTTGGCTATCTTCCAAACCTGGATAGAATACAAATCGATCAGAACAACATATCAGGACCTATACCTACGTCATTTGCAAACCTGAACATGACAAGGCACTTTCACATGAACAATAATTCACTTAGCGGACAAATCCCACCAGAGCTTTCCCGATTGCCAAAGCTTGTTCACCTTCTTCTCgacaataacaaattatcagGATATCTTCCCCCTGGGCTGTACAAAATGCCGAGCTTACTTATCATTCAACTTGATAACAATGACTTTGGCGGAGATAGTATTCCCGATACATATGCCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAACTTGCGAGGACCAATTCCTGATTTAAGCAGGATACCTCATCTTCTTTATCTTGACCTCAGTTTCAACCAGTTGAATGAATCGATTCCTCCCAATAAGCTTTCTGAAAATATCACAACCATTGATTTATCAAACAACCGCCTTACTGGAAATATTCCATCCTACTTTGCTGATCTTCCAAATCTTCAGAAATTGTCACTTGCAAACAATTCATTGAATGGCAGTGTTTCTTCCTCCATCTGGCAGAATAAGACTTCAAATGGAACAGAACAATTTCTCTTGGAGTtggaaaataataatcttataaCCATATCAGGCAGTATTAATCTTCCTCCAAATGTCACAGTTGGGCTTGATGGGAATCCCCTCTGTTCAAACAACATAACCCTGGTTCAGTTCTGTGGACCTGAAGGTGCTACTGTAACAAATGGCTCATTGACAACAAATACCAGTTCCTGTCCCCCTCAAGCATGCCCTCCTCCTTATGAATACTCTGTGGATTGTTTCTGTGCGCTTCCATTGCTTGTTGCCTATCGGCTGAAAAGTCCTGGATTTTCGGACTTTCGTCCATATTTGAATGCATTTGAGGACTACATGACTTCTGGTGTTAATATATCTACCAATCAGCtacaatatgatttttattggcAAGTAGGACCTCGACTCAGAATGGACTTGAAGTTTTTTCCTGTATATGTTGATAACAAGAGTAATTCTATTTTCAATAGAAGTGAGCTCCTACGGCTCACAAGCATGTTCACAGGATGGCTAATTCCAGACAGTGATTTGTTTGGGCCTTATGAACTGATTAGCTTCACACTTTTGGGTCCTTACCAGGATGAGTTTCCCACGAGTTCAAAATCATCAACGATAAGTACTGGTGCGCTGGTTGGCATAGTCATAGGGGCAATTGCCTGTGCTGTGACGTTATCTGCAATTGTTACCATTCTTATATTGAGAATAAAATTGAGAGATTCTCACGCCGTTTCCAAACGACGTCGTGCATCTAAGGTCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTATGGGGAATTGTCCTCTGCCACAGACAATTTCAGCATCTCTGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTTTATAGAGGTATTCTTTCTGATGGCACAGTTGTTGCTATAAAACGTGCACAAGAGGGATCCCTGCAAGGTGAGAGGGAGTTCCTTACTGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTTTCTCTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCTAATGGCACATTGAGGGATCACCTTTCTGTTACAGCTAAAGAACCTCTGACTTTTGCCATGAGATTGAAGATCGCGCTAGGGGCAGCTAAAGGTCTTACGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTAAAGGCCAGCAACATATTATTGGATCCTAAGTTCTCCGCGAAAGTGGCTGATTTTGGACTTTCACGGCTTGCCCCAGTTCCAGATATGGAAGGAGTTGTGCCTGGTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTCGTATTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACACGGCAAAAATATTGTTAGAGAGGTTAATGTTGCGTACCAATCCGGCGTGACATTTTCAATCGTCGATGGACGTATGGGGTCTTATCCATCTGAGCACGTGGAGAAATTTTTGACTTTGGCCATGAAATGTTGCGAAGATGAGCCAGAGGCACGGCCTAGCATGGCAGAAGTGGTTAGAGAACTCGAGAACATATGGTCTACAATGCCAGAATCAGATACCAAGAGAGCTGAATTTATTATATCCAGTGATTCTGGCAAAACAGACAGTCACAGTACACCATCTTCATCCTCTGCTATGAGGACTCCTTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2859 0.4089 MYLSKSFKHEVVFILCFCYYFLHAAGQNNITDNTEVEALKAIKSSLIDPNGNLSNWNRGDPCTSRWKGVLCFNETKEDGYLHVQELQLLRLNLSGTLAPDLGKLTYMERLNFMWNNISGSIPKEIGNITSLILLLLNGNNLTGPLPEELGYLPNLDRIQIDQNNISGPIPTSFANLNMTRHFHMNNNSLSGQIPPELSRLPKLVHLLLDNNKLSGYLPPGLYKMPSLLIIQLDNNDFGGDSIPDTYANMSKLLKMSLRNCNLRGPIPDLSRIPHLLYLDLSFNQLNESIPPNKLSENITTIDLSNNRLTGNIPSYFADLPNLQKLSLANNSLNGSVSSSIWQNKTSNGTEQFLLELENNNLITISGSINLPPNVTVGLDGNPLCSNNITLVQFCGPEGATVTNGSLTTNTSSCPPQACPPPYEYSVDCFCALPLLVAYRLKSPGFSDFRPYLNAFEDYMTSGVNISTNQLQYDFYWQVGPRLRMDLKFFPVYVDNKSNSIFNRSELLRLTSMFTGWLIPDSDLFGPYELISFTLLGPYQDEFPTSSKSSTISTGALVGIVIGAIACAVTLSAIVTILILRIKLRDSHAVSKRRRASKVSIKIDGVRAFTYGELSSATDNFSISAQVGQGGYGKVYRGILSDGTVVAIKRAQEGSLQGEREFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTAKEPLTFAMRLKIALGAAKGLTYLHTEADPPIFHRDVKASNILLDPKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNVAYQSGVTFSIVDGRMGSYPSEHVEKFLTLAMKCCEDEPEARPSMAEVVRELENIWSTMPESDTKRAEFIISSDSGKTDSHSTPSSSSAMRTPFVSGDVSGSDLVSGVIPSIKPR 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1330 952 SMART LRR_typ_2 319 343 IPR003591 -
Ssu9g1330 952 SMART LRR_typ_2 200 224 IPR003591 -
Ssu9g1330 952 SMART LRR_typ_2 272 296 IPR003591 -
Ssu9g1330 952 Gene3D Ribonuclease Inhibitor 31 295 IPR032675 -
Ssu9g1330 952 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Ssu9g1330 952 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 922 - -
Ssu9g1330 952 Pfam Protein kinase domain 622 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1330 952 Gene3D Phosphorylase Kinase; domain 1 590 695 - -
Ssu9g1330 952 ProSiteProfiles Protein kinase domain profile. 620 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1330 952 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Ssu9g1330 952 SUPERFAMILY L domain-like 44 391 - -
Ssu9g1330 952 SMART serkin_6 620 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1330 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Ssu9g1330 952 Gene3D Transferase(Phosphotransferase) domain 1 696 913 - -
Ssu9g1330 952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 922 - -
Ssu9g1330 952 CDD STKc_IRAK 626 892 - -
Ssu9g1330 952 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Ssu9g1330 952 Pfam Leucine rich repeat 297 334 IPR001611 GO:0005515
Ssu9g1330 952 MobiDBLite consensus disorder prediction 910 932 - -
Ssu9g1330 952 Gene3D Ribonuclease Inhibitor 296 386 IPR032675 -
Ssu9g1330 952 MobiDBLite consensus disorder prediction 908 952 - -
Ssu9g1330 952 SUPERFAMILY Protein kinase-like (PK-like) 605 915 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1330 Ssu-Chr9 47688625 47701493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1330 1 902 Receptor kinase-like Gene Family AT5G01950 58.079 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu9g1330 Pkinase 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1330 - - gmx:100786467 1649.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1330 9 47688625 47701493 Ssu9g1330 9 47688625 47701493 ECH
Ssu9g1330 9 47688625 47701493 Ssu6g2788 6 64689643 64738161 PCT