Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1324 ATGAAGGCCGGCAAAGTTGACTCTGAATTTAATTGTCAATATCTTATTCCTTACAGAAAACAACTCTCCATGAAGTTTCATTCTACTTCAGTggcttctttcctttttgtcataattattctttttcctcTGGCTATTGCTGATCTAAGTTCAGATAAGCAAGCCTTACTTGATTTTGCTAATGCTGTCCCCCACCTCCGAAACCTTATGTGGAACACATCCACCTCAGTCTGTACATCTTGGGTAGGCATCACTTGCAATCAAAATAGAACTCGTGTTGTTAATGTCCGGCTCCCTGGAGTTGGACTAGTTGGCAACATCCCATCCAACACACTTGGCAAGCTTGATGCCGTGAAAATTATTAGCCTTCGCTCCAACCTACTCAGTGGAAATCTCCCTGCTGACATTGcttctcttccttctcttcAGTATCTCTACCTCCAGCATAATAACCTTTCTGGTGATATACCTGCCTCATTGTCTCCCCAACTCATTGTGCTTGATTTGTCATATAATTCATTCATTGGTGGCATTCCGAagacttttcaaaatttgtcagAATTAACTAGTTTGAATCTCCAGTACAACTCCCTATCCGGACAGATACCTAATCTCAATGTCACTCAGCTCAGGCTTTTGAATTTAAGCTATAACCATTTGAATGGCTCTATTCCTAAAGCTCTTCAGATTTTTCCTAATTCTTCCTTTGAAGGAAACTCTCTTTTGTGTGGACCACCTCTAAAGCCATGCTCTGGGGTTCCCCCTACGCCTTCTCCTGCCTTGACTCCACCTCCATCATCAACTCCTGGAAGACGAGGCTCAAAAAACAAGTTGAGTAAAATAGCTATCATTGCAATTGCTGTTGGAGGAGCTGTGGTGCTATTCTTTGTTGCTCTTGTTATTGTTCTTTGCTGTATAAAGAGGGAAGATGACAGAGGCTccattaatgtaattaaaggAAAGGGTCCTAGTGGTGGTAGGGGTGAGAAGCCAAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGgcagttcttataattttgatcTTGAGGATTTGTTGAGAGCTTCAGCCGAAGTTCTGGGAAAGGGTAGTTATGGTACTGCATATAAGGCCATACTGGAGGAGTCCATGACTGTCGTGGTGAAAAGATTGAAAGAAGTTGTGGTAGGAAAGAAGGACTTTGAACAACAGATGGAGATTATGGGAAGAGTCGGACAACACACAAATGTTGTGCCACTTCGtgcttattattattcaaaagatGAAAAGCTTTTGGTATATGACTATGTCCCAGGTGGCAACCTACACACACTCTTGCATGGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCCAGAATAAAAATATCCCTCGGAACTGCCAAAGGACTTGCCCACATTCATTCTGCTGGTGGTCCCAAATTCACACATGGAAATATTAAGTCCTCAAATGTGCTCCTCAACCAAGATAATGATGGCTGCATTTCTGATTTTGGCCTGGCCCCCCTTATGAATGTTCCTGCTACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAACTCGTAAACACTCTCATAAATCCGATGTGTACAGCTTTGGTGTCCTCCTTCTTGAGATGCTTACTGGGAAGGCTCCTCTCCAATCTCCGGGTCGTGATGATATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGAGAAGAGTGGACTGCCGAAGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAGGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGATGCCAGATATGAGACCTACCATGGATGAAGTAGTGAGAATGATCGAAGAGATCCGGCAATCTGACTCAGAGAACCGACCTTCTTCTGAAGAAAATAAATCTAAGGACTCAAATATTCAAACTCCATAG 1980 0.4091 MKAGKVDSEFNCQYLIPYRKQLSMKFHSTSVASFLFVIIILFPLAIADLSSDKQALLDFANAVPHLRNLMWNTSTSVCTSWVGITCNQNRTRVVNVRLPGVGLVGNIPSNTLGKLDAVKIISLRSNLLSGNLPADIASLPSLQYLYLQHNNLSGDIPASLSPQLIVLDLSYNSFIGGIPKTFQNLSELTSLNLQYNSLSGQIPNLNVTQLRLLNLSYNHLNGSIPKALQIFPNSSFEGNSLLCGPPLKPCSGVPPTPSPALTPPPSSTPGRRGSKNKLSKIAIIAIAVGGAVVLFFVALVIVLCCIKREDDRGSINVIKGKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHTNVVPLRAYYYSKDEKLLVYDYVPGGNLHTLLHGGRTGGRTPLDWDSRIKISLGTAKGLAHIHSAGGPKFTHGNIKSSNVLLNQDNDGCISDFGLAPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPTMDEVVRMIEEIRQSDSENRPSSEENKSKDSNIQTP 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1324 659 Gene3D Phosphorylase Kinase; domain 1 332 439 - -
Ssu9g1324 659 SUPERFAMILY L domain-like 50 250 - -
Ssu9g1324 659 SUPERFAMILY Protein kinase-like (PK-like) 368 642 IPR011009 -
Ssu9g1324 659 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515
Ssu9g1324 659 Gene3D Ribonuclease Inhibitor 207 251 IPR032675 -
Ssu9g1324 659 Pfam Protein kinase domain 367 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1324 659 ProSiteProfiles Protein kinase domain profile. 364 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1324 659 MobiDBLite consensus disorder prediction 634 650 - -
Ssu9g1324 659 MobiDBLite consensus disorder prediction 325 339 - -
Ssu9g1324 659 ProSitePatterns Protein kinases ATP-binding region signature. 370 401 IPR017441 GO:0005524
Ssu9g1324 659 MobiDBLite consensus disorder prediction 634 659 - -
Ssu9g1324 659 PANTHER LRR RECEPTOR-LIKE KINASE 16 659 - -
Ssu9g1324 659 PANTHER OS05G0588300 PROTEIN 16 659 - -
Ssu9g1324 659 MobiDBLite consensus disorder prediction 253 273 - -
Ssu9g1324 659 Gene3D Ribonuclease Inhibitor 49 206 IPR032675 -
Ssu9g1324 659 MobiDBLite consensus disorder prediction 317 339 - -
Ssu9g1324 659 CDD STKc_IRAK 370 635 - -
Ssu9g1324 659 Pfam Leucine rich repeat N-terminal domain 50 87 IPR013210 -
Ssu9g1324 659 Gene3D Transferase(Phosphotransferase) domain 1 440 658 - -
Ssu9g1324 659 Pfam Leucine rich repeat 106 152 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1324 Ssu-Chr9 47568952 47571186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1324 9 657 Receptor kinase-like Gene Family AT5G58300 67.073 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu9g1324 Pkinase 7.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1324 - - gmx:100796171 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1324 9 47568952 47571186 Ssu9g1324 9 47568952 47571186 ECH
Ssu9g1324 9 47568952 47571186 Ssu6g2786 6 64606387 64610256 PCT