Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1321 ATGAGTATTGACACACACCAACCTCTCATGTCCGTACAACCAACCCCGAAGCTCCGCCCCTTTAACCCACAAACCCCAAGCTCAAATTTTGACGGCAACCCACCATGCAAAACCGCCAGAAAAACCCAACCACCGCAAAAGAAGCTCCTCCGGGTCATTCTCACCGACCACGACGCCACCGACTCGGACTCCTCCGGCGACGATGAAGACCAAAACAACCCACCAAAACACcgaaaagtgaaaagaaagatcACCCAAATCACTATCAACCTTCCCTTCTCCTCAGAGCCCCCAACACAACCTTCATCTTCTTCCCACGACCCGACCCGTTTGACCCGACCCGAGAAAAGACCCCCCGCACCTCGGCGCGGGAACAAATTCCGCGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGACCGCCGAGATCCGCGACCCGACTCGCCGGAAACGGGTCTGGCTCGGCACCTTCGACACGGCGGAGGAAGCGGCCGCCGTGTACGACGAGGCCGCCGTGAAGCTCAAGGGCCCCAACGCCGTCACCAATTTCCCCCTCGGCCCCGCGAAAACGGAAGACGTTTCGCCGCCGGAGGCGGCCTTCTCCGGAGACGGTTTCGCGTCGCCGACGTCCGTCTTGGCTTATTGCGACGGCGAGTCCATGCCGTTTGACTGTTTCCGTTACGGCGCGGTGGATGCGTTCGGGTTCGATATCGACGCGCCGTTTAGTTTGACGGACGTTAACTCCGGGCTGCTGAGTCAGCGGTTTGGGAAGGAACAGTTCGGCGAGTTTGACACGGACGAGTTCTTGACGTGGCCAAGTTAA 819 0.591 MSIDTHQPLMSVQPTPKLRPFNPQTPSSNFDGNPPCKTARKTQPPQKKLLRVILTDHDATDSDSSGDDEDQNNPPKHRKVKRKITQITINLPFSSEPPTQPSSSSHDPTRLTRPEKRPPAPRRGNKFRGVRQRPWGRWTAEIRDPTRRKRVWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPLGPAKTEDVSPPEAAFSGDGFASPTSVLAYCDGESMPFDCFRYGAVDAFGFDIDAPFSLTDVNSGLLSQRFGKEQFGEFDTDEFLTWPS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1321 272 PIRSF PTI6 17 272 IPR017392 GO:0003700
Ssu9g1321 272 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Ssu9g1321 272 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 268 - -
Ssu9g1321 272 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Ssu9g1321 272 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Ssu9g1321 272 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Ssu9g1321 272 MobiDBLite consensus disorder prediction 22 40 - -
Ssu9g1321 272 MobiDBLite consensus disorder prediction 87 108 - -
Ssu9g1321 272 MobiDBLite consensus disorder prediction 1 129 - -
Ssu9g1321 272 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 39 268 - -
Ssu9g1321 272 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Ssu9g1321 272 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Ssu9g1321 272 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Ssu9g1321 272 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1321 Ssu-Chr9 47556386 47557204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1321 48 213 AP2-EREBP Transcription Factor Family AT4G27950 44.751 1.59e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu9g1321 AP2 5.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1321 K13434 - gmx:102660028 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1321 9 47556386 47557204 Ssu9g1321 9 47556386 47557204 ECH
Ssu9g1321 9 47556386 47557204 Ssu6g2784 6 64569523 64570377 PCT