Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1319 ATGTCGTATGTGCCTCCACACCTCAGAAACGCGAGCTCCACCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGAcaatcaccaccaccaccacgccAAGCTCGCATTTCCTTCCAACAACAGCACCAATTGctccccctctctctcctcCTTCCACAACGCCTCTCGCCGGAGCTCCGCCGCGCCTCCGTCGCCGCGGATTCTCGCCGCCCCCGACCCCGTCTTCCCTCAATGGCAACCCTCCGAACGCGTTTCCCGCATGACCCCCCAACAGATTGAAGAGGTCCGGTCCCGGCTTAATCTTGATGTTACTGTTGCATCTGACTCTCCTCCTGCGCCTGCACCAATAGAATCGTTTACAGATAtgTGTTTGCACATGAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTAAGTGGAAAGGATCTATTGGGTTGTGCTGAAACTGGTAGCGGAAAGACTGCGGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGGCGCAATGATGGTCCCCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTAAAAACTGCTATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGATCTGAACTAAGAGCCGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGATCACTTACAGCAAGGCAACACTTCCCTCTCTAgaatttcttttgttgttctaGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCTAGCCCAGTGCAAGTGCAGGTGGGGAACGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTTTTAGGTTTGCTTGTTGAGGAGGCATCACAGGCCGGAAAATGTGGTCATCCATTTCCTTTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGTGATGAAGTTGCCGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGACGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAACATTTTGGTTGCTACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCGTTTTACACTGATCGTGACATGTTTCTTGTGGCAAATATAAGGAAAGCAATAGCTGATACTGAATCTGGGAACACACTGACATTTGCAACCGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCGAAACAGTTAGGATTGGGAGCTGCTTCAATCAACATTGAAGATAAATACAAGTTCATGATTACTGCTGCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGATGATTAA 1695 0.4549 MSYVPPHLRNASSTTVATARTPSVTLDNHHHHHAKLAFPSNNSTNCSPSLSSFHNASRRSSAAPPSPRILAAPDPVFPQWQPSERVSRMTPQQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLHMSIMKDIAYHEYTRPTSIQAQAMPIALSGKDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVQVGNVSSPTTNVSQTLVKISENEKIDRLLGLLVEEASQAGKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADTESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASINIEDKYKFMITAANIKREGAADSAWDD 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1319 564 SMART helicmild6 386 467 IPR001650 -
Ssu9g1319 564 CDD DEADc 130 327 - -
Ssu9g1319 564 Pfam Helicase conserved C-terminal domain 370 467 IPR001650 -
Ssu9g1319 564 Coils Coil 508 528 - -
Ssu9g1319 564 MobiDBLite consensus disorder prediction 47 68 - -
Ssu9g1319 564 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 529 - -
Ssu9g1319 564 Gene3D - 79 330 IPR027417 -
Ssu9g1319 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 487 IPR027417 -
Ssu9g1319 564 Pfam DEAD/DEAH box helicase 143 313 IPR011545 GO:0003676|GO:0005524
Ssu9g1319 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 326 IPR014001 -
Ssu9g1319 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 508 IPR001650 -
Ssu9g1319 564 CDD SF2_C_DEAD 338 476 - -
Ssu9g1319 564 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 19 529 - -
Ssu9g1319 564 Gene3D - 332 526 IPR027417 -
Ssu9g1319 564 Coils Coil 205 225 - -
Ssu9g1319 564 MobiDBLite consensus disorder prediction 47 62 - -
Ssu9g1319 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Ssu9g1319 564 SMART ultradead3 138 341 IPR014001 -
Ssu9g1319 564 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1319 Ssu-Chr9 47524199 47532099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1319 119 489 Eukaryotic Initiation Factors Gene Family AT1G72730 34.933 8.88e-67 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1319 K12823 - gmx:100818387 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1319 9 47524199 47532099 Ssu9g1319 9 47524199 47532099 ECH