Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1313 ATGACCCATTTAATCGTTTTCTTTTGGGGTGAGACAAAGTGGAATTTTGGAATTTGGATTAATGGGTTCCGACATTTGCGTTGTGAATGGTTCGTGCGCTCACGAATGGAGAAAGGGGTGGACTCTGCGATCTGGCGGATTCGCCCAACTGTGCTGCAAGTGCGGGTAAATTTGAGCCCTTTTGCTTTGAATCTCATCTGTTCGCCAATTTTGGGATTTATGGAGGAGTGGAAGGGTGACATCCTTGACCCATTATCTGCCTCCGAGAATTCAATTTTCTGTAATAAATTCCATCGCCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGCGGATGCGTAGTATCTAGGTCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTACCCAACTTAGTATGACGAGGAATACTGAAAATCCAAATGTGTCTGtttcattgataaaaaataatgcaagtGATCGGCATTCTGCTCATTTTGATGGCAGACTGTTTATGGGTGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTGTTGAAGCTAGTGAATCCAGCCGTTGGAATCATGCTCAAAGAGATGGCATAATTGCACGTCATGGGCAAAACAACCAAGAAGCTAAGTGTTCATTCAGGGAAGGGGACATTGGATTTTCAAATGTGATGAAACCATCTGTTCAGTCATTAACATTTGCTACgctagaaaataataataggtcAACATGGGAGATTAAAAACATGCACGAGTCAAATGCACAGCCATCTTTGAGTATGTATCTGGGAAATGCATCAGGGAACAACTCTGTCCTGCCTTCTGCTGGAGAGGCTGTAGAAGGAAGACTTGAGGGAAAAGCATCTCCTCCCTTTCATCAAGGGCAAAGATCTCGCCCTATATTTCCCAAACCGTTGAAGAGTGGACTTCCCATGAATGTGGAAACAGATAAGGGTACAATTTCTCAATCACGTGTTGCTCGGCCACCTGCCGATGGCAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATTACTGATCAAGAGCTGGAGCGATTGGCTGGGGATTTAAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCCTATTTCACAATCTGAAGGAGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTTACCCCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTACGGATACGCAGGATGCCTCCACATCTGCACAGTCTAATTCAGCAAAGGGAACAACCTTTTCTGGTGGAACTGAGAATCTGCCATCAGGAAGCAATCATGCCGATCTTCTCCATTCAATGACAGGGAATGTGGAACCTCACTTAAATGGACGTACAGAACATCTGCATTTGGGTGCTGGAACTGCTGGGTTGcttaaaactgaaaattttgagatgacaAACAATAGTTCACTACAACAACAAAGTTCGGTTTTAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGCTGCTTATTGATAATGAAGATGCTATGGAGTTGAAACTTACATGGGAAGAAGCACAGGATTTGCTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATACGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTGCCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTGCCTGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATTCAAGCAGgtgtTCATGCTCTGCACCAGAGGAGCTAAGTTCAAGGGAATTAGACAATCTTCTGAAAACCAACAAAGATTTTAAGAAGCGACAAATTGTAGAAAACAGCAAGTCAATCCAAGAACACGAGCCTTCTGGCTTGGATGCTCTTGCCAGTGCAGCAGTTCTAGGAGAAAATCTCGTCGACACTGCCGAATCCTCAGCTGGAGCCACCACCAAACATCCTAGACACCGTCCCGGCTGCTCTTGCATCGTGTGCATTCAGCCCCCAAGCGGAAAGGGGAGGCATAAGCCGACATGCACATGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTAAGAAAGAAGAAACGGCAATCCGAACGCGAAGCAAATGCTGCCCAAAAAGATCAAGTTATCCAAAAAGAGGAGTCAGAAACAAATGGAGCATCAAGAGATGATACAAGTCGTTTGGAGAAAGAGGTTGGTCTAAACAGAAGTCAAGTTGAAGTGGGTGAGTCCAGTGCTGGACAGATAGATCTGAATTCTCATCCCAACCGCGAAGACATGCAAGTGGATATCGCAGGACTTAACATGTCTAGTCATCTTGAAACaacaacaaaccatacagtGAGGGAATATATGAACCAAAATGGCCTAAGAAGCTTTAATAATGAAGTGCAGACTGGTCAGAATTCTTTGCAAACTCGATCTAATGGAGAAGGTCAGCGATATTTCTCCGATGGAAGGTGCTTTGCATCCATTGTGTGGAACCAGGAAAGAAGAGATGAGGTATACAGTCAACCCAATCAAAGTCAAAACAATCTTacttaa 2850 0.4305 MTHLIVFFWGETKWNFGIWINGFRHLRCEWFVRSRMEKGVDSAIWRIRPTVLQVRVNLSPFALNLICSPILGFMEEWKGDILDPLSASENSIFCNKFHRQQTGWRECNFCNKPIHCGCVVSRSLFEYLDFGGIGCVSCVNTTQLSMTRNTENPNVSVSLIKNNASDRHSAHFDGRLFMGGVDEGKLMQFCKIVEASESSRWNHAQRDGIIARHGQNNQEAKCSFREGDIGFSNVMKPSVQSLTFATLENNNRSTWEIKNMHESNAQPSLSMYLGNASGNNSVLPSAGEAVEGRLEGKASPPFHQGQRSRPIFPKPLKSGLPMNVETDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNSAKGTTFSGGTENLPSGSNHADLLHSMTGNVEPHLNGRTEHLHLGAGTAGLLKTENFEMTNNSSLQQQSSVLEKKRTRNIGPKSKRLLIDNEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDSSRCSCSAPEELSSRELDNLLKTNKDFKKRQIVENSKSIQEHEPSGLDALASAAVLGENLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREANAAQKDQVIQKEESETNGASRDDTSRLEKEVGLNRSQVEVGESSAGQIDLNSHPNREDMQVDIAGLNMSSHLETTTNHTVREYMNQNGLRSFNNEVQTGQNSLQTRSNGEGQRYFSDGRCFASIVWNQERRDEVYSQPNQSQNNLT 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1313 949 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 86 902 - -
Ssu9g1313 949 MobiDBLite consensus disorder prediction 476 530 - -
Ssu9g1313 949 Gene3D - 355 482 IPR015300 -
Ssu9g1313 949 MobiDBLite consensus disorder prediction 476 518 - -
Ssu9g1313 949 MobiDBLite consensus disorder prediction 840 856 - -
Ssu9g1313 949 MobiDBLite consensus disorder prediction 297 349 - -
Ssu9g1313 949 ProSiteProfiles B3 DNA-binding domain profile. 377 478 IPR003340 GO:0003677
Ssu9g1313 949 ProSiteProfiles Zinc finger CW-type profile. 639 689 IPR011124 GO:0008270
Ssu9g1313 949 Pfam B3 DNA binding domain 377 476 IPR003340 GO:0003677
Ssu9g1313 949 SMART B3_2 377 478 IPR003340 GO:0003677
Ssu9g1313 949 MobiDBLite consensus disorder prediction 795 838 - -
Ssu9g1313 949 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 86 902 - -
Ssu9g1313 949 CDD B3_DNA 375 476 IPR003340 GO:0003677
Ssu9g1313 949 SUPERFAMILY DNA-binding pseudobarrel domain 375 477 IPR015300 -
Ssu9g1313 949 MobiDBLite consensus disorder prediction 792 856 - -
Ssu9g1313 949 Gene3D - 642 698 - -
Ssu9g1313 949 Pfam CW-type Zinc Finger 644 686 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1313 Ssu-Chr9 47427507 47434732 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1313 86 864 B3 DNA Binding Superfamily AT2G30470 50.383 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu9g1313 B3 1.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1313 - - gmx:100789848 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1313 9 47427507 47434732 Ssu9g1313 9 47427507 47434732 ECH
Ssu9g1313 9 47427507 47434732 Ssu6g2779 6 64430882 64450017 PCT