LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu9g1309	ATGTTTAAAGGGATGTACAGGAATGCCGCTCAGCATTATGGTGGTAATGTGATTagaaaactgatttttaataaaaggtaCTTTGGAAAGGGCAGGGAAGACGGAGGGGCTGGTTTAGAGGAAGTAGAGCATGTAGATGCCATTTTTACTTTGCTTAAGCACATTTATGCCTTTTATGTTTCTGATTATATCCCATTTTTGAGGATGTTTGATTTGGATGGCCATAAGGGCAAGGTGAAGAATGCTATGAGGATCATGAAGAAGTATCATGATTCCATCATTGAAGACAGAATCAAGCAATGGAATGACGGATTGAAGGCTGTTGAAGAGGACTTGCTGGATGTTATGATCTCACTCAAGGACGTCAATAATAATTCATTGTTGACAGTGAAGGAAATCAAGGCACAAATTATAGAATTGATGATTGAAGTGGTGGACAATCCAGCAAATGCAACTGAATGGGCACTGGCAGAAATGATAAATCAGCCCGAATTGCTTCAACGAGCCAAGGAAGAATTGGACAATGTGGTAGGTGGAAAGAGACTAGTCCAAGAATCAGATATTCCTAAACTCAACTTTGTGAAGGCTTGTGCAAAAGAAACTTTTCGCCTTCATCCCATTGTGCCTTTCACCGTTCCCCATGTTTGTATGAAGGACACAGCGGTTGCCAATTACTCGATCCCAAAGGGTAGTCATATACTACTAAGCAGAAGGGGTCTTGGGAGAAACCCAAAAGTGTGGAATGAACCCCTCAAGTTCAAGCCAGAACGCCACCTCAAGAGTGATGGGTCTGATGTAGTTTTGACAGAACCAGATTTAAGGTTGATATCATTCAGCACGGGAAGGCGTGGTTGTCCTGGAATAATGCTTGGCACCACAATGACTGTAATGCTATTGGCTAGGTTGCTCCATGGCTTCACTTGGAGTGCACCTCCTAATGTGTCAAGCATCAATCTTGCCGAGTCCAAAGGGAATTTGTTTCTTGCTGAGCCACTTGTGGCACTTGCAAAGCCAAGATTAGCAGCAGAATTGTACCACCTTTAA	1044	0.4205	MFKGMYRNAAQHYGGNVIRKLIFNKRYFGKGREDGGAGLEEVEHVDAIFTLLKHIYAFYVSDYIPFLRMFDLDGHKGKVKNAMRIMKKYHDSIIEDRIKQWNDGLKAVEEDLLDVMISLKDVNNNSLLTVKEIKAQIIELMIEVVDNPANATEWALAEMINQPELLQRAKEELDNVVGGKRLVQESDIPKLNFVKACAKETFRLHPIVPFTVPHVCMKDTAVANYSIPKGSHILLSRRGLGRNPKVWNEPLKFKPERHLKSDGSDVVLTEPDLRLISFSTGRRGCPGIMLGTTMTVMLLARLLHGFTWSAPPNVSSINLAESKGNLFLAEPLVALAKPRLAAELYHL	347

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu9g1309	347	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	278	287	IPR017972	GO:0005506\|GO:0016705
	Ssu9g1309	347	PANTHER	P450 FAMILY PROTEIN, PUTATIVE-RELATED	7	345	-	-
	Ssu9g1309	347	PRINTS	E-class P450 group I signature	152	178	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu9g1309	347	PRINTS	E-class P450 group I signature	236	260	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu9g1309	347	PRINTS	E-class P450 group I signature	13	31	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu9g1309	347	PRINTS	E-class P450 group I signature	285	308	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu9g1309	347	PRINTS	E-class P450 group I signature	275	285	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu9g1309	347	PRINTS	E-class P450 group I signature	195	213	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu9g1309	347	PANTHER	FLAVONOID 3'-MONOOXYGENASE-RELATED	7	345	-	-
	Ssu9g1309	347	Gene3D	Cytochrome P450	6	344	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu9g1309	Ssu-Chr9	47376255	47383183	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu9g1309	7	345	Cytochrome P450	AT5G05260	55.588	1.86e-140	407

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu9g1309	-		K14984	gmx:100809902	530.02

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