Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1303 ATGGGTCCTTCATTTCTCGAATCGGTGGCGGCAATGTCGAAGGCCAAGGGTAAAAGTATtaagaataatgataatgataatgataataataatagtggtgatgatgataatggtggtagtggtgcaTGCATGAAGGATGTGGCAATGCATGATGAAAATCAGGAAGTGGGTGGGTGTGACTTGCCTCCTCAAAGAGATAAAGTAGCAATTCAGAAGCGGAATCCTCAGCTTAAACTCAAGCTCTCTGCACTTCGTACATGTAATAGAGGAGTTAAAATATCTGGTCCTGAGGAAGTGGAACCAGCAAAATCGTGGAGCAAACATGATCCTGTGCCTAGTGCTGAAGTTAGGAAAGTTCGGGAATCCCTTAAATCAAGTTCTTTGGAGTTACGAGCGTTGATCAAAGATCCTCTTCCCGATGCATTGCATACATCTGAAGTTGTAAGATCCAAATTGGCAACAAGAGATACAAATATTGAGCCATCTATTGAAAACCAGAGGGAAGATGTAGATGTACCAGATCCAAATGTTTGCAAGAGTATTGTACTTTTTCAGCCTAATGATGCCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTAATGTTCACCAGCCCTGCTTAATGGAACGGAAAAGAAGTGCTCGTTCCTTTGAGtGGGATGATTCAATAGACAACTCGCCACAAGCAAGACAGCCAAGGAGGAGGAAAAGGAAATGGTCTTCATTGGAAGAAGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCGACAATCCGAAGTTTTTACAGtaacatatttgaaaatagaagtggagttGATCTGAAGGACAAGTGGAGAAACATGATACGTTGA 864 0.3831 MGPSFLESVAAMSKAKGKSIKNNDNDNDNNNSGDDDNGGSGACMKDVAMHDENQEVGGCDLPPQRDKVAIQKRNPQLKLKLSALRTCNRGVKISGPEEVEPAKSWSKHDPVPSAEVRKVRESLKSSSLELRALIKDPLPDALHTSEVVRSKLATRDTNIEPSIENQREDVDVPDPNVCKSIVLFQPNDANLGKKSSVHCSNVHQPCLMERKRSARSFEWDDSIDNSPQARQPRRRKRKWSSLEEETLRAGVKMFGEGNWATIRSFYSNIFENRSGVDLKDKWRNMIR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1303 287 Pfam Myb-like DNA-binding domain 236 285 IPR001005 -
Ssu9g1303 287 PANTHER MYB TRANSCRIPTION FACTOR 1 287 - -
Ssu9g1303 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 287 IPR017930 -
Ssu9g1303 287 SUPERFAMILY Homeodomain-like 232 286 IPR009057 -
Ssu9g1303 287 ProSiteProfiles Myb-like domain profile. 231 286 IPR001005 -
Ssu9g1303 287 MobiDBLite consensus disorder prediction 1 49 - -
Ssu9g1303 287 MobiDBLite consensus disorder prediction 218 239 - -
Ssu9g1303 287 CDD SANT_TRF 237 287 - -
Ssu9g1303 287 PANTHER MYB TRANSCRIPTION FACTOR 1 287 - -
Ssu9g1303 287 SMART sant 235 287 IPR001005 -
Ssu9g1303 287 Gene3D - 227 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1303 Ssu-Chr9 47206157 47208849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1303 236 285 Single Myb Histone (SMH) Gene Family AT3G49850 55.769 2.51e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu9g1303 Myb_DNA-binding 5.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1303 - K11111 gmx:100791258 402.905