Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1295 ATGTATTCCAATAAAGGGTGTAAGGAGGATGGCAAAGCTGAGCCTCGTTACATGGAAACCGACCCAACTGGTAGATATGCTCGGGTTGGAGATATTCTTGGAAAAGGGGCAATGAAGACAGTGTATAAAGCAATTGATGAGGTCCTTGGAATAGAAGTAGCATGGAACCAGGTCAAACTCAACGAGGCACTTCGCAAACCAGAGGACTTGGAGCGGCTTTATTTAGAGGTTCATCTACTCAGCACCCTCAAGCACCAATCCATCATGAGATTCTACACCTCTTGGATTGATGTTGACAACAAGACCTTCAACTTCATTACAGAAATGTTTACTTCAGGGACACTGAGAGAGTACAGGAAGAAATATAAGCACATAGGCCTACAAGCAATAAAGGGTTGGGCTCGCCAGATCTTACAGGGACTTGTTTATCTACATGAACATGATCCTCCAGTAATTCATAGGGATCTCAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTGAAAGTTGGTGACCTTGGTCTAGCAGCAATTCTCCATGGTTCCCAGCCAGCTCACAGTGTTATagGCACCCCAGAGTTCATGGCACCAGAATTGTATGAGGAGGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGATTATCCATATAGTGAATGTGCTAACCCTGCACAGATATACAAGAAAGTGACATTGGTGAGTTCAGATCGTGGTTTGAGGTTTAAAGATATCAGTAGAGCTGGGATTTTATATACAAGCAACTTTTCTGTCTTTTATGTTCAGGGGAAGCTACCAGCAGCATTTTTCCGGATTGAAGACACAGAAGCGCAGAAGTTTATTGGCAAATGTCTAATAGCTGCTGCAAAGAGACCATCAGCAAAAGAATTGTTGCATGATCCATTTCTTTTGTCTGATGATGCATCATCCATGACGAAGATTGGAATTCAGAAGccatttttaaattacagtGAAATGGAAAAACTTCAATTGAGTGATGATTTACCTAGGACTAAAATGTCAATAACTGGGAAGTTGAATCCAGAAGATGATACTATCTTTCTCAAAGTGAAAATTTCTGACAAGGATGGTTCTTGTAGGAATGTATACTTTCCCTTTGACATATACACAGACACCCCCATTGATGTTGCGATAGAGATGGTGAAAGAATTGGAGATCACAGATTTGAAGCCTTCTGATATTGCAAATATGATTGAAGGAGAGATATCTGTGCTGCTGCCAAATAGGAGGAATAGTAACTGTTCAGACACCTGCCATACATTCAGTTATCACGATGACGACGACGATGAAGGTCCACGTCATCATTTCCACTCTGTCTCTTCTTGTTCACCATCCCAAGAATCAATATCAGGCTCAGTCAGTAGAGCTGATGACTTATTGAATGGATATTATTGGCTCCATGGTGATATGCATGATGATGCCAGTTCAATATGCTCTTCACATGGGACATATTCCAACTCAAACTTTTGTTCAGTGGATGACCAGGAGGAACACAATAAGGATTCtacaagaaaagataaacatCCCATCATAAAGAGTCACATGTGTACAAGATTTTCCCCTAATGAAGACCCCATCACTTTGAACCTATGCAAAGTTTTAGCAGGACCACAAGAACCTTCTACTAGCAAAAATAAGAGGATGATAGACAATCGTAGATTAACAAGGAACAAGTCATTAATTGATATGAGGAGTCAGCTACTACACAGATCACTGGTTGAGGAGTTAAACAAAAGAAGGCTATTCAAGACAGTTGGAGCTGTGGAAAATATTGGATTTCTGACACCTTATGAGGTTACCAACAAAAAGCCACAGCCAGCACGTGGTGCTTTTGATGTGAACTCTTCAAGGAGTAGCAAGGGAGAAAACTTAGGAgccaaaagaatttaa 1944 0.3981 MYSNKGCKEDGKAEPRYMETDPTGRYARVGDILGKGAMKTVYKAIDEVLGIEVAWNQVKLNEALRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVDNKTFNFITEMFTSGTLREYRKKYKHIGLQAIKGWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKVGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECANPAQIYKKVTLVSSDRGLRFKDISRAGILYTSNFSVFYVQGKLPAAFFRIEDTEAQKFIGKCLIAAAKRPSAKELLHDPFLLSDDASSMTKIGIQKPFLNYSEMEKLQLSDDLPRTKMSITGKLNPEDDTIFLKVKISDKDGSCRNVYFPFDIYTDTPIDVAIEMVKELEITDLKPSDIANMIEGEISVLLPNRRNSNCSDTCHTFSYHDDDDDEGPRHHFHSVSSCSPSQESISGSVSRADDLLNGYYWLHGDMHDDASSICSSHGTYSNSNFCSVDDQEEHNKDSTRKDKHPIIKSHMCTRFSPNEDPITLNLCKVLAGPQEPSTSKNKRMIDNRRLTRNKSLIDMRSQLLHRSLVEELNKRRLFKTVGAVENIGFLTPYEVTNKKPQPARGAFDVNSSRSSKGENLGAKRI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1295 647 Gene3D Transferase(Phosphotransferase) domain 1 110 321 - -
Ssu9g1295 647 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 23 244 - -
Ssu9g1295 647 SMART serkin_6 27 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1295 647 Pfam Protein kinase domain 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1295 647 PANTHER WNK KINASE 23 244 - -
Ssu9g1295 647 PANTHER WNK KINASE 273 625 - -
Ssu9g1295 647 ProSiteProfiles Protein kinase domain profile. 27 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1295 647 MobiDBLite consensus disorder prediction 621 647 - -
Ssu9g1295 647 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Ssu9g1295 647 SUPERFAMILY Protein kinase-like (PK-like) 28 343 IPR011009 -
Ssu9g1295 647 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 273 625 - -
Ssu9g1295 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1295 Ssu-Chr9 46833834 46838095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1295 17 626 MAP Kinase Kinase Kinase AT5G58350 55.340 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu9g1295 Pkinase 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1295 K08867 - gmx:100778102 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1295 9 46833834 46838095 Ssu9g1295 9 46833834 46838095 ECH
Ssu9g1295 9 46833834 46838095 Ssu6g2768 6 64249412 64253289 PCT