Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1291 ATGGTCGACATGCACGTGTGTCCCACAACACCTCACAATTCTCtgtctcctcattctctctcctCCGAACCTGCCGTACCTCACAAACAAAAAACTGAAAGTCCCTCACATTTTtgccccaaaaaaaaaaaaagaaacgcaGCGACACCCCACTTCCCGAGAATCACAAAGATCGAAGTTTGCCCGCGACCCATTTCAATTCGCCCCTCCAATCGCGCGTTCCGCCCTACAATTTCTCCTCTGCGTTGGTCCTTCCCGGATTCGGAGCTAGGGTTCGGGATCTGGTATCGCCGGCGCGACATGCCGGAGATAGAGCAGGCggtggcggcggcggaggaCACCGCCCTCTTCGGCAAGTACGAGCTCGGGCGCGTCCTGGGCTGCGGCGCGTTCGCGAAGGTCCACTACGCGCGCAACGTGCAGACGGGGCAGAGCGTGGCCGTGAAGATCATCAGCAAGAAGAAAATCGCCGGAACGGGCCTTGCCGGAAACGTGAAACGCGAGATCGCGATCATGAGCAGGCTCCACCACCCCCACATCGTGCGCCTCCACGAGGTCCTCGCCACGAAAACCAAGATCTTCTTCGTCATGGACTTCGTCCGCGGCGGGGAGCTCTTCGCGAAAATCTCCAAGGGGCGCTTCGCGGAGGATCTCAGCCGGAGGTACTTCCACCAGCTGATCTCCGCCGTCGGCTACTGCCACTCCCGCGGCGTCTTCCACCGCGACCTCAAGCCGGAGAACCTCCTCCTCGACGACAACGGCGACCTGAGGGTCTCGGATTTCGGGCTGAGCGCCGTTAGGGATCAGATCCGACCCGATGGGTTGCTCCACACGCTTTGCGGAACGCCTGCTTACGTGGCACCCGAGATTTTAGCCAAAAAAGGTTACGATGGTGCTAAGGTTGATGTTTGGTCGTGCGGCGTCGTTTTGTTCGTTCTGGCTGCGGGGTACTTACCGTTCAACGACCCGAATCTGATGGTAATGTATAAGAAGATTTACAAGGGGAGTTCCGGTGTCCGCGGTGGATGTCGCCGGAGCTCCGGCGGTTTTTGGCGAAGTTGCTTGACACCAACCCGGAGACGAGGATCACGGTCGATGGTATGA 1104 0.5534 MVDMHVCPTTPHNSLSPHSLSSEPAVPHKQKTESPSHFCPKKKKRNAATPHFPRITKIEVCPRPISIRPSNRAFRPTISPLRWSFPDSELGFGIWYRRRDMPEIEQAVAAAEDTALFGKYELGRVLGCGAFAKVHYARNVQTGQSVAVKIISKKKIAGTGLAGNVKREIAIMSRLHHPHIVRLHEVLATKTKIFFVMDFVRGGELFAKISKGRFAEDLSRRYFHQLISAVGYCHSRGVFHRDLKPENLLLDDNGDLRVSDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYKKIYKGSSGVRGGCRRSSGGFWRSCLTPTRRRGSRSMV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1291 367 Gene3D Transferase(Phosphotransferase) domain 1 110 363 - -
Ssu9g1291 367 SMART serkin_6 120 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1291 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Ssu9g1291 367 MobiDBLite consensus disorder prediction 9 29 - -
Ssu9g1291 367 PANTHER - 101 336 - -
Ssu9g1291 367 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 101 336 - -
Ssu9g1291 367 ProSiteProfiles Protein kinase domain profile. 120 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1291 367 MobiDBLite consensus disorder prediction 1 46 - -
Ssu9g1291 367 SUPERFAMILY Protein kinase-like (PK-like) 117 338 IPR011009 -
Ssu9g1291 367 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Ssu9g1291 367 Pfam Protein kinase domain 120 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1291 Ssu-Chr9 46765104 46767143 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1291 101 336 CBL-interacting serine-threonine protein kinases AT2G30360 76.569 2.19e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu9g1291 Pkinase 3.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1291 - K12761 gmx:100799169 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1291 9 46765104 46767143 Ssu9g1291 9 46765104 46767143 ECH
Ssu9g1291 9 46765104 46767143 Ssu6g2762 6 64151691 64152983 PCT