Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1285 ATGGAGATATCATTGTTAAAAATGATCGTTAATGGCATATCCTCGTTTTTGCATTTGTCATTTTCTGGAAACATGAACTCTGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACTTAAGTTATTGAAGCCAATCATTGATGCGATTATTAATTCTGAGTTAGCCTCTGACGAAGTGCTTAGTAAGATATTGGAAGAAATTGGTCATGCTGTTAATGAATTAAAGGAGCATGTTGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTGATATCAAAAATTCACACTTCAGGGCTCAATATATTCCAGCAGCTGAAGGCTTCTCAGCATTGTCTCCCTGATGAATTAAGTTCTGAACATTTACAGCACTGTTCACAAAAACTTAAGCTTTTGGGACATGAAGAAACCTCATCAGCCATTAAGGAAGCTATTACAGAACAACTGGAAAATGTAGGACCCAGTTCAGAGGTCCTGGCTAAAATTGCTGATAGCCTGGGCCTAAGGTCTAATCAGGAGGTTCTGATTGAGGCCGTGGCCCTCGAAAGGTTGAAGGAGAATGCTGAACAAACTGAGAAGACCGCAGAAGTTGAATACATTGATCAAATGATTGCTGTTGTAACACGTATGCACGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGTAGCAGCCCAGTTCCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCCGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCACTAATTGCAAATTGGTGTGAATCGAACAATGTGCAACTGGTTGATCCTGCAAAATCCACAAATTTAAATCAAGCATCCGTCCTTCATGGGTATATGGAATCTGGTACAACCAGGGAATCACCTGTTTTTGCTCATTCCAGGAGCAACCAGCCTTCCTCACCTGAGTCAGCACGTTCTCATTCTTTTAGTTCACCAGTTAATAACTTAACTTCTGGTGGAATTCAGCGAGAGGGGACATCACCATTGCATCCCCGTTCAACTTCAGAAGGCTCCTTAAGTGGTATGGTTAATGGGCAATATATGGATCTTGCAAAACTAGCTCCTGCTGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGGTAGCCAACCATCAATGTCACCATCTAGAAGGGAATCTTCCAGTGCCTTCAGCTCTGAACAATCTCAGACCCATATTAGAGCTGTTTCTGATTCCAGTGCACTTTCTACTGCAAATTTTCCTCAAGAAACACAAGGTGATGACAACAATGCTCCTCAGCTGTCAACCAGTCCAGGCTGCAGTAGAGATGCTTCTGGTGAATTAAATCCAGGGCCAGAAACTGCTGGTACTACTGCTGTACCATCAATGCATAGAGAACCCGAGTTCCCACCCCGATTGTTGGAGACAAGGTCTCGAAGTCAAGCCATGTGGAGGCGGCCATCTGAGAGGCTTGTTCCTAGGATAGGATCTTCTCCTGCTATTGAAACAAGAGCTGATCTTTCTGGTATTGAAACCCAGGTTCGGAATGTGGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGCGCCATTAACATATTAGTTGATTTGCTTCGATCAACTGATACAACTATCCAAGAAAATGCCGTTACTGCACTTCTGAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTTGAGACTGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGATCTGGGGCAATTGGACCACTGGTTGATTTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACAGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGGTCGGATTGTGCTAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTCATGAAGGTGGGATTCCTGTTCTggttgaggttgttgagttGGGTTCTTTGAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTCGCATAGTCCCAGATTTTTAAGCAATGTGCTCCAACAGGGAGCTGTCCCGCCATTAGTAGCTTTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTTAATCTATTTAGAAGTCAAAGACATGGGAATAGTGGAAGGGGCTGA 2520 0.4349 MEISLLKMIVNGISSFLHLSFSGNMNSEPVSKYYQKAEEILKLLKPIIDAIINSELASDEVLSKILEEIGHAVNELKEHVENWHLLSSKVYFVMQVEPLISKIHTSGLNIFQQLKASQHCLPDELSSEHLQHCSQKLKLLGHEETSSAIKEAITEQLENVGPSSEVLAKIADSLGLRSNQEVLIEAVALERLKENAEQTEKTAEVEYIDQMIAVVTRMHERLVMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPAKSTNLNQASVLHGYMESGTTRESPVFAHSRSNQPSSPESARSHSFSSPVNNLTSGGIQREGTSPLHPRSTSEGSLSGMVNGQYMDLAKLAPAGLDDRSASSDESSVDSGSQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTANFPQETQGDDNNAPQLSTSPGCSRDASGELNPGPETAGTTAVPSMHREPEFPPRLLETRSRSQAMWRRPSERLVPRIGSSPAIETRADLSGIETQVRNVVEGLRSSDLDTQREATAELRLLAKHNMDNRIAIANCGAINILVDLLRSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKGRIVLAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGHEGGIPVLVEVVELGSLRGKENAAAALLHLCSHSPRFLSNVLQQGAVPPLVALSQSGTPRAKEKAQALLNLFRSQRHGNSGRG 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1285 839 SMART arm_5 790 829 IPR000225 GO:0005515
Ssu9g1285 839 SMART arm_5 539 583 IPR000225 GO:0005515
Ssu9g1285 839 SMART arm_5 708 747 IPR000225 GO:0005515
Ssu9g1285 839 SMART arm_5 667 707 IPR000225 GO:0005515
Ssu9g1285 839 SMART arm_5 585 625 IPR000225 GO:0005515
Ssu9g1285 839 SMART arm_5 626 666 IPR000225 GO:0005515
Ssu9g1285 839 SMART arm_5 748 788 IPR000225 GO:0005515
Ssu9g1285 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 316 IPR013083 -
Ssu9g1285 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Ssu9g1285 839 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 835 - -
Ssu9g1285 839 Gene3D - 537 836 IPR011989 -
Ssu9g1285 839 Pfam Armadillo/beta-catenin-like repeat 669 706 IPR000225 GO:0005515
Ssu9g1285 839 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515
Ssu9g1285 839 Pfam Armadillo/beta-catenin-like repeat 626 665 IPR000225 GO:0005515
Ssu9g1285 839 PANTHER U BOX DOMAIN-CONTAINING 7 835 - -
Ssu9g1285 839 Coils Coil 179 209 - -
Ssu9g1285 839 SUPERFAMILY RING/U-box 226 313 - -
Ssu9g1285 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 720 IPR000225 GO:0005515
Ssu9g1285 839 MobiDBLite consensus disorder prediction 417 485 - -
Ssu9g1285 839 CDD RING-Ubox_PUB 240 282 IPR045210 -
Ssu9g1285 839 SUPERFAMILY ARM repeat 556 828 IPR016024 -
Ssu9g1285 839 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Ssu9g1285 839 MobiDBLite consensus disorder prediction 408 528 - -
Ssu9g1285 839 MobiDBLite consensus disorder prediction 338 392 - -
Ssu9g1285 839 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Ssu9g1285 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 719 760 IPR000225 GO:0005515
Ssu9g1285 839 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1285 Ssu-Chr9 46677442 46684940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1285 196 839 U-box Gene Family AT2G23140 63.411 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1285 - - gmx:100811250 1439.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1285 9 46677442 46684940 Ssu6g2757 6 64041136 64043702 PCT