Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1267 ATGACCACTTCCTTCTCTGACCTCCTTTCTTCCCCCACCGACCACAACCTCGGAGGCTCCGAAAGACCTCACGAGTTGTCGGATCAAACAGGTTCCGGTGTGTCAAAATTCAAGTCCACACCCCCTCcatctctccctctctctcacCCTCCTAACCATGCTCTTCCACCCATTTCTCCTTCTTCTTACTTTGCCATCCCTCATAGGTTAAGCCTTGCTGAACTTCTTGATTCCCCAGTTCTCCTTCAGTCTTCTAACGTTTTGCCATCTCCAACAAGTGGATCATTTGCTGGTCAAGGCTTCAATTGGAAGAGCAGTTATGGGGAAAGCCAGCAGCATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCCTTCCAAACACAAACACAGCCTCCTCTTCCGTCTTCAACTGGATTTCAATCTTCAACCTGCATAGTTCAAAACGGATGGAGTTTTCCAGAAACTGCTAAACAGGATGGTTTTTCTTCAAGAATGAGCATGAGTATGGTGAAAACTGAAACGTCTTCTTCGATGCAGAGTTTCAACCCTGAGAATAACCACAGGAATGGTTTTCAACCAGATTATAACAAGTACCAACCACAAGTTCAGACCTTAAGCAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCCAATTGcccaacaaagaaaaaggttgagaGGTCCTTAGATGGGCCAATTACTGAGATAGTTTACAAAGGCACTCATAACCATCCCAAGCCTCAGGCTGCCAAGAGGAACTCACTGTCTGCCTCATCACTTGCAATTCCTCATTCAAATATTGTCGGCAATGAAATACCACATGCCACTCATCAAATGGATTCGGTTGCCACTCCAGAAAACTCATCAATATCAATGGAAGATGATGATTTTGATCATAGTAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATATCAGCTGTAGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGACATCGATATTCTGGATGATGGATACAGATGGAGGAAATATGGGCAGAAAGTAGTCAAAGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACATACCCAGGATGTCCAGTGAGGAAGCACGTAGAGCGAGCCTCACATGATCTAAGGGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGACGTGCCTGCAGCACGTGGCAGTGGCAGCAACTCTATCAGTAGATCACTGCCAATAACCAATACCACAAACAACACCATTAGTGCAGCCACTTCtatatacactaacaatgcTCTTCAGAGTCTTAGACCACCAGCACCAGAAAGGCAATCACACTTCAACCCCAATATGCAGCAGAACTCAGGAAGTTTTGGATTCGCAGGGTTAGGAAATCCATTAATGGGGTCTTACATGAATCAGCAATCTAACAATAATGTGTTCACCTCTAGAGCCAAGGAGGAGCCTGAAGATGACTCGTTTCTTAACTCTTTGCTATGTTAA 1608 0.4266 MTTSFSDLLSSPTDHNLGGSERPHELSDQTGSGVSKFKSTPPPSLPLSHPPNHALPPISPSSYFAIPHRLSLAELLDSPVLLQSSNVLPSPTSGSFAGQGFNWKSSYGESQQHVKEEDKSFSSFSFQTQTQPPLPSSTGFQSSTCIVQNGWSFPETAKQDGFSSRMSMSMVKTETSSSMQSFNPENNHRNGFQPDYNKYQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGPITEIVYKGTHNHPKPQAAKRNSLSASSLAIPHSNIVGNEIPHATHQMDSVATPENSSISMEDDDFDHSKSGGDEFDNDEPDAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTYPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNSISRSLPITNTTNNTISAATSIYTNNALQSLRPPAPERQSHFNPNMQQNSGSFGFAGLGNPLMGSYMNQQSNNNVFTSRAKEEPEDDSFLNSLLC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1267 535 ProSiteProfiles WRKY domain profile. 367 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 MobiDBLite consensus disorder prediction 301 334 - -
Ssu9g1267 535 SUPERFAMILY WRKY DNA-binding domain 364 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 MobiDBLite consensus disorder prediction 1 42 - -
Ssu9g1267 535 SMART WRKY_cls 210 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 SMART WRKY_cls 372 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 MobiDBLite consensus disorder prediction 1 60 - -
Ssu9g1267 535 Gene3D WRKY domain 197 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 SUPERFAMILY WRKY DNA-binding domain 209 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 MobiDBLite consensus disorder prediction 314 334 - -
Ssu9g1267 535 Pfam WRKY DNA -binding domain 373 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 Pfam WRKY DNA -binding domain 211 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 ProSiteProfiles WRKY domain profile. 211 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 508 IPR044810 GO:0003700
Ssu9g1267 535 MobiDBLite consensus disorder prediction 121 139 - -
Ssu9g1267 535 MobiDBLite consensus disorder prediction 43 57 - -
Ssu9g1267 535 Gene3D WRKY domain 359 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g1267 535 MobiDBLite consensus disorder prediction 178 197 - -
Ssu9g1267 535 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 23 508 - -
Ssu9g1267 535 MobiDBLite consensus disorder prediction 107 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1267 Ssu-Chr9 46307645 46310415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1267 208 534 WRKY Transcription Factor Family AT2G38470 55.874 6.48e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu9g1267 WRKY 2.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1267 K13424 - gmx:100127421 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1267 9 46307645 46310415 Ssu9g1267 9 46307645 46310415 ECH
Ssu9g1267 9 46307645 46310415 Ssu6g2728 6 63236106 63238608 PCT