Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1253 ATGGGAATGGCTCACTTCAAAGATATAGCAATGGCACATATTTTGGCACTTGAGAACAAGAAAGCAGCAGGAAGGCACTTGTGTGTGGAAGCTATTCGTCACTTTAGTGATATTGTGGACAAAGTTGCTGAGTTATACCCTGAATACAACGTGGCCAAGTTGCCAAAGGATACCCAACCAGGGTTGTTGAGAGCAAGTGCAAAGGATGCATCAAAGAAGCTGATTGATTTAGGCCTAGAGTTCACTCCTGCTGACCAAATAATCAAGGATGCAGTGGAGAGTTTGAAGAGCAGGGAGGATGAAAACGAGACGAAacatttggaggaaatggaaggAGCTAAGAGTCGTCTCCGTCTTTTGGAAATGGATCTTCTTGACGTCGACTCCATTGCTGTAGCCGTAAAGGGTTGCTCTGGCGTAATCCACCTCGCATGTCCTAACATCATTGGTCAAGTCAAGGATCCcgagAAGCAGATTTTGGAACCGGCGATAAAAGGAACGGTTAATGTGCTGAAGGCGGCGAAGGAAGCGGGGGTGGAGCGCGTGGTGGCGACTTCGTCGATCTCCGCCATTACGCCAAGTCCTAATTGGCCAGCTGATAAGATCAAGGGAGAAGAGTGTTGGACGGACCTTGACTACTGCAAGGAGAAGAGGTTATACTATCCCATTGCAAAGACCCTAGCGGAGAAAGCTGGGTGGGAATTTGCTAAGGAGACAGGCTTCGACGTGGTGATGATAAATCCGGGCACAGCCTTGGGCCCTTTGATTCCCCCAAGAATGAATTCCAGCATGGCAATGCTTGTTAGCGTTTTGAAAGGCGATAAAGAGACGTACGAGGACTTTTTTATGGGAATGGCTCACGTTAAAGATGTAGCCATGGCACATGTTTTGGCGCTTGAGAACAAAAAAGCTGCCGGAAGGCACTTGTGTGTGGAAGCTATTCGTCACTGGATTGATTTTGTGGAAATTGTTGCTGATCTATACCCTGAGTACAATGTAGCTAGGATGGAATATGATACCCAACCAGGGTTGTTAAGAGCAAAGAATGGAGCACAGAAGCTGATGGATTTAGGTCTAGAGTTCACTCCTGCGGAACAAATTATCAAGGAAGCAGTGGAGAGTTTGAAGAGCAGGGGTTATGTTTAA 1146 0.4581 MGMAHFKDIAMAHILALENKKAAGRHLCVEAIRHFSDIVDKVAELYPEYNVAKLPKDTQPGLLRASAKDASKKLIDLGLEFTPADQIIKDAVESLKSREDENETKHLEEMEGAKSRLRLLEMDLLDVDSIAVAVKGCSGVIHLACPNIIGQVKDPEKQILEPAIKGTVNVLKAAKEAGVERVVATSSISAITPSPNWPADKIKGEECWTDLDYCKEKRLYYPIAKTLAEKAGWEFAKETGFDVVMINPGTALGPLIPPRMNSSMAMLVSVLKGDKETYEDFFMGMAHVKDVAMAHVLALENKKAAGRHLCVEAIRHWIDFVEIVADLYPEYNVARMEYDTQPGLLRAKNGAQKLMDLGLEFTPAEQIIKEAVESLKSRGYV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1253 381 Pfam NAD dependent epimerase/dehydratase family 97 307 IPR001509 -
Ssu9g1253 381 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 96 373 - -
Ssu9g1253 381 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 93 - -
Ssu9g1253 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 95 IPR036291 -
Ssu9g1253 381 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 1 93 - -
Ssu9g1253 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 99 375 IPR036291 -
Ssu9g1253 381 CDD FR_SDR_e 99 359 - -
Ssu9g1253 381 Gene3D - 1 99 - -
Ssu9g1253 381 Gene3D - 100 381 - -
Ssu9g1253 381 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 96 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1253 Ssu-Chr9 46032389 46059736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1253 1 98 Monolignol Biosynthesis Gene Families AT5G58490 66.327 4.36e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1253 - - gmx:100806281 491.5