Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1251 ATGGGGGGTACCTCACCTTGTGCTTCTTGCAAGTTATTGAGACGCCGTTGCTCCAACGAATGCATCTTTGCTCCTTACTTTCCTTCTGATGACCCCCGCAAGTTTGCCATTGTTCATAAGGTCTTTGGTGCTAGCAATGTCAGTAAAATGCTGCAGGAGCTTCCAGTTCATCAAAGAGCAGATGCTGTGGGCAGTTTGGTTTATGAGGCAAATGCAAGAATGAGAGACCCAGTTTATGGATGTGTTGGAGCCATATCATACCTACAAAGTCAGGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTTTATGCATCCAGATGCAGCAACAAGAGCCTACCTTAGCCACACAAGTAGACCAAGATGACAAATCACTGCTCCTATCTGTAAACAATAACTACGAAATCCTTCCTCAGCATCTTATCTttccttcatcttcttcctCATCTTCCAATGTATTTCAAGACCCCGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTGA 513 0.4308 MGGTSPCASCKLLRRRCSNECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPVHQRADAVGSLVYEANARMRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQQEPTLATQVDQDDKSLLLSVNNNYEILPQHLIFPSSSSSSSNVFQDPEPLKRESFWT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1251 170 Coils Coil 85 105 - -
Ssu9g1251 170 MobiDBLite consensus disorder prediction 148 170 - -
Ssu9g1251 170 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 2 167 - -
Ssu9g1251 170 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Ssu9g1251 170 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Ssu9g1251 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1251 Ssu-Chr9 45999348 46000716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1251 3 170 AS2 family AT2G30130 65.789 1.52e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu9g1251 LOB 3.6e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1251 9 45999348 46000716 Ssu9g1251 9 45999348 46000716 ECH
Ssu9g1251 9 45999348 46000716 Ssu6g2692 6 62573346 62573850 PCT