Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1239 ATGTCCATGGCTGGTGAGCAGGGTGATATATGTTCCTCCATCACCATACCCCTTCTGGGTGATGAAAAAGTGCACCAAGTGAATGGTTCAGATGGGGAGTTGGTGGCCAAAACTTGTGATCTACACACAGCTCATGTGGGTAACGCATCCTTTTTCAAGACCTGCTTTCACCTGATTAATGCCCTCTCAGGAGTTGGCATTATTTCCATGCCTTACGCACTCGCATCTGGGGGATGGTTAAGCATATCACTGCTATTTGTGATTGCCATGGCTTGCTGTTACACTGGCATGTTGGTCAAAAGATGCATGGATATGGACCCTGATATAAGGACCTTCCCTGACATAGGTCAACGTGCATTTGGAGACAAGGGGAGGCTAATAGTATCAATGGCCATGAATTCTGAGCTCTACCTAGTTGTAACAGGTTTTCTGATTTTAGAGGGGGACAATCTTAACAATCTAGTACCAAACGTGCAACTTGACCTTGCAGGGTTAACAATTGGTGGTACAACAATTTTTACCATGATTGCTGCCCTTGTTATTTTGCCTAGTGTTTTGTTGGAGGATTTGAGCCTGCTGTCTTATGTCTCTGCTAGTGGGGCTTTAGCTTCTTCCATCTTCCTCCTCTCTCTATTTTGGAATGGCACCATTGATGGTACTGGATTTCATGCAAAGGGAACACTCTTTAGATTGAGTGGAATACCTGCTGCTGTCAGTTTATATGCCTTCTGTTATAGTGCTCATCCAATCCTTCCCACTCTGTACAATTCTATGAgaaacaaaagtcacttttccaGGGTGCTGTCTGTATGCTTTTCGGTATGCACCCTTGGTTATGCAGTAGCTGGTGTTTTGGGCTACTTAATGTTTGGGCAAGAGGTTGAATCTCAGGTGACTTTGAACCTCCCAACAGGCAAGTTCAGTTCACATGTGGCAATATTCACTACCTTGGTCAATCCTATAACCAAATATGCATTGATGATTACTCCAGTCATAAATGCGGTAAAAAACAAGGTTTCATGGCATTACAACAAAAGGTTCACACATATGTTTGTCAGTTCCTCCGTGCTCATTAGCACTCTTATTGTAGCCGTGGCCGTTCCCTTGTTTGGATATCTCATGTCACTCATTGGGGCATTACTAAGTGTCTCGGCTTCAATTTTAGTACCATCAGTGTGCTACTTGAAGATTTCAGGAGCTTACAAGAGATTTGGGTCTGAAATGATCATCAACTATTCAATAATAGTAATGGGGGTTACTATTGCTGTTGTGGGTACTTATACTTCTCTAGGGGATATAGTTCATAATTTGTAA 1314 0.4224 MSMAGEQGDICSSITIPLLGDEKVHQVNGSDGELVAKTCDLHTAHVGNASFFKTCFHLINALSGVGIISMPYALASGGWLSISLLFVIAMACCYTGMLVKRCMDMDPDIRTFPDIGQRAFGDKGRLIVSMAMNSELYLVVTGFLILEGDNLNNLVPNVQLDLAGLTIGGTTIFTMIAALVILPSVLLEDLSLLSYVSASGALASSIFLLSLFWNGTIDGTGFHAKGTLFRLSGIPAAVSLYAFCYSAHPILPTLYNSMRNKSHFSRVLSVCFSVCTLGYAVAGVLGYLMFGQEVESQVTLNLPTGKFSSHVAIFTTLVNPITKYALMITPVINAVKNKVSWHYNKRFTHMFVSSSVLISTLIVAVAVPLFGYLMSLIGALLSVSASILVPSVCYLKISGAYKRFGSEMIINYSIIVMGVTIAVVGTYTSLGDIVHNL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1239 437 Pfam Transmembrane amino acid transporter protein 48 428 IPR013057 -
Ssu9g1239 437 PANTHER OS05G0424000 PROTEIN-RELATED 3 435 - -
Ssu9g1239 437 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 3 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1239 Ssu-Chr9 45739001 45743506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1239 40 434 Amino Acid or Auxin Permease AAAP Family AT3G28960 54.293 1.11e-154 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1239 K15015 - gmx:100784690 785.793