Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1238 ATGGCCGGTGAGCAGCGTGACAGGTGCTCCTCCATCGCCATACCCCTTCTGAGTGATGAAAAAGTGCACCAAGTGAATGGTTCAGATGGGGCGTTGGTGGCCAAAACTTGTGATCTACACACAGCTCATGTGGGTAACTCCTCTTTTTACAAGACCTGCTTCCATCTGATTAATGCCCTCTCAGGAGTCGGTACAATATCCATGCCTTATGCACTGGCATCTGGGGGATGGTTAAGCATATTGCTGTTCTTTGTGATTGCCATTACTTGCTGTTACAGTGGCATATTGATCAAAAGATGCATGGAAATGAACTCTGATATCAAGACCTTTCCTGACATAGGTCAACGTGCATTTGGATACAAGGGGTGGCTAATGGTATCAATTGCCATGAATTCTGAGATCTACCTAGTTGTAACAGGTTTTTTGATTTTAGAGGGGGGCAATCTGAATAAACTAGTACCAAACGTGCAACTTGACCTTGCAGGGTTAACAGTTGGTGGCACAACAATTTTCACCATAATTGCTGCCCTTATTATTTTGCCTAGTGTTTTGTTAGAGGACCTGAGCATGTTATCTTATGTCTCTGCTAGTGGGGTTTTAGCTTCTTCcatttttctcctctctctaTTATGGAATGGCACCATTGATGGCACAGGATTTCATGCAAAGGGTACTACACTTTTCAGATTGAGTGGAATACCTACTGCTGTTAGTTTATATGCCTTATCTTATAGTTCTCATCCAATCATTCCCAGTCTCTACATTtcaatgagaaaaaaaagtcaGTTTTCTAAAGTCTTATTTGTATGCTTTTTAGCATGCACTCTTGTTTATGCAGCAGTAGCTGTTTTGGGCTACTTAATGTTTGGAGAAGATGTGAAATCGCAGGTGACTTTGAACCTCCCAAGTGACAAGTTCAGTTCACATGTAGCAATATACACTACCTTGATCAATCCTATAACCAAATATGCATTGAACCTTACTCCAGCCATTCATGCTATAAAAAACAAGGTTTCATGCCATTACAACAAAAGGCTCACACATATGCTTGTTGGTACCTCTTTGCTCATCAGTACTCTTATTGTAGCCGTGGCCATTCCCTTATTTGGATCCATTATGTCACTTGCTGGGGCATTACTAAGCATTTCAGCTTCAATTTTAGTACCATCAGTGTGCTACTTGAAGATTTCAGGAGCTTACAATAGATTTGGGTCTGAAATGATCATCAACTATTCAATAATAGTGATGGGGGTTCTTATGGCTGTTGTAGGTACTTACACGTCACTCGTGGATATAGTTCAGAATTTGTAA 1311 0.3989 MAGEQRDRCSSIAIPLLSDEKVHQVNGSDGALVAKTCDLHTAHVGNSSFYKTCFHLINALSGVGTISMPYALASGGWLSILLFFVIAITCCYSGILIKRCMEMNSDIKTFPDIGQRAFGYKGWLMVSIAMNSEIYLVVTGFLILEGGNLNKLVPNVQLDLAGLTVGGTTIFTIIAALIILPSVLLEDLSMLSYVSASGVLASSIFLLSLLWNGTIDGTGFHAKGTTLFRLSGIPTAVSLYALSYSSHPIIPSLYISMRKKSQFSKVLFVCFLACTLVYAAVAVLGYLMFGEDVKSQVTLNLPSDKFSSHVAIYTTLINPITKYALNLTPAIHAIKNKVSCHYNKRLTHMLVGTSLLISTLIVAVAIPLFGSIMSLAGALLSISASILVPSVCYLKISGAYNRFGSEMIINYSIIVMGVLMAVVGTYTSLVDIVQNL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1238 436 PANTHER OS05G0424000 PROTEIN-RELATED 1 434 - -
Ssu9g1238 436 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 1 434 - -
Ssu9g1238 436 Pfam Transmembrane amino acid transporter protein 46 428 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1238 Ssu-Chr9 45719915 45726053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1238 38 433 Amino Acid or Auxin Permease AAAP Family AT3G28960 50.630 2.29e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1238 K15015 - gmx:100784690 687.567