Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1237 ATGGAAGAACCGTGGAGATTCATCACTTGGTTAAAGCTCTTCCGCGTGTTTGTGGCGGTTCTGTCTCTATTCCCGTTCAGCATGGAACCTATTTGGTGTGCGACTCTCAACAGCGAAGGGTTGGCGCTGCAAAAGATGAGGGAGAGGGTGGTGAGAGATCCATTGGGTGCTTTATCGAGTTGGAACGGCAAAGAAGGAGTGGTTGATCCTTGCTCCTGGTTCGGCGTAGAGTGCTCCCACGGCAATGTTGTATCCTTGAATTTGAAAAATCTCTGTCTCCACGGAACACTACCACCCGAAATTGGGGAGCTGGTTCACATAAAATCACTCATTTTGCGCAACAATTATTTCTACGGAGAAATCCCTAGGGAGATACTACAATTAGAGGACCTGGAAGTTCTTGACTTAGGATATAACAACTTTAGTGGACCATTTCCATCTGAAGACCTCGGCAACAAACCATCCCCTACCCTTTTATTGGACAACAATGAGTATCTTGCCATCTTAACTCCAGAAGTGTATAAGCTCAAGACGATTTCTGAATTGCATGTACATGAAGAACAACTAACTGGTGCCACCACTAGAGAAGCATGTGTAAGCATATCCAATAACTGGCACATTGGCCAACATGGGGATATAGCATACAGCAGGAAACTTCTCCAAACAGCAAATGGTGCTAACTTGCTCAGAGCCAAGAGGGGTGATGATGACAAAGAGAATCtttcaccatcaccatcaccttTTCCCTCTACACTATCACCAGTTCCTGAGCCTTTCTCACCATCACCATCAGAGAGTCCCTCAGATTCACCAACATCTCCAGAACTTTCCCCTGCACCATCTCCATCtctctccattttctttttcactcttTCACCCTCACCTTCACCTGTGGTAGCACCAACTCCAGACATATCACCTCCAGCAAATCCACCTATGGTTGTGTCCACACCACCACACTCCAATTGGGTTTCAATGCCTTCTCCTGCTTCATCTTCAAACCAAGGGAATGCAAACAGCTCAAAACCAAAGCAACATACTGTGATTATTTGGTCTACAGTTGGGGGCTTCTCCTTCCTGATTTTGGTGTCAGCCATTGTTCTTGTTTGCTTTAGAAGTAATAAGGTTGTAACTGTAAAACCTTGGGCCACAGGGTTGAGTGGCCAGCTGCAGAAAGCATTTGTATCAGGTGTTCCAAGTCTGAAACGAACAGAACTTGAAGTTGCTTGTGAAGATTTCAGCAACATTATTGGTTCACTACCTGATGTGACTATTTATAAGGGGACTCTCTCCAGTGGAGTTGAGATAGCTGTAGCATCCTCTGCAGTGACTTCATCCCAAAACTGGTCCAAAAATATGGAAACTCAATTCCGGAAGAAGATTGAGATGTTGTCAAGAGTGAACCACAAGAATTTTGTGAATCTTATTGGACATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACGCTATTTGAGCATCTACACATTAGAGAAGCAGAACAACTAGACTGGGGAATGAGAATGAGGATAGCTATGGGAATAGCCTACTGTCTGGAGCACTTGCATCAGCTGACGCCACCCATTGCCTACAGGAACATACTATCTTCTTCTATATACTTGACTGAAGATTATGCTGCTAAATTATCAGACCTTTGTTTCTGGACTGATGTAGAGTCTACAAAGAAGGGTTCTGAAGCCACACAGCTCTTAGAAACAACATCAGCATATATAAAGGCCAATGTTTACAGCTTTGGAGTATTATTGTTTGAATTGATTACAGGGAGAGTTCCCTATGCAGTGGAGAACGGCTTACATGAAGATTGGGCTGCAGAATATATAAAGGGGCAACCCTTGAGAGACTTGGTGGATGCAAGCCTGAACTCTTTGCAAGCAAATGAAATTGAGAAATGGACAGAAGTGATTAACGGCTGTGTACATCCAGATCCAGAGAAAAGGCCAACTATGAGAGAGGTTACTACTAAGTTGAAGGAAATCACTGCTATGGGGCCTGATGGAGCAACTCCAAAACCATCTCCTCTTTGGTGGGCAGAAATAGAAATTATGTCCACCGACTTAAGTTCAGGCCTTAATCCAtaa 2124 0.4303 MEEPWRFITWLKLFRVFVAVLSLFPFSMEPIWCATLNSEGLALQKMRERVVRDPLGALSSWNGKEGVVDPCSWFGVECSHGNVVSLNLKNLCLHGTLPPEIGELVHIKSLILRNNYFYGEIPREILQLEDLEVLDLGYNNFSGPFPSEDLGNKPSPTLLLDNNEYLAILTPEVYKLKTISELHVHEEQLTGATTREACVSISNNWHIGQHGDIAYSRKLLQTANGANLLRAKRGDDDKENLSPSPSPFPSTLSPVPEPFSPSPSESPSDSPTSPELSPAPSPSLSIFFFTLSPSPSPVVAPTPDISPPANPPMVVSTPPHSNWVSMPSPASSSNQGNANSSKPKQHTVIIWSTVGGFSFLILVSAIVLVCFRSNKVVTVKPWATGLSGQLQKAFVSGVPSLKRTELEVACEDFSNIIGSLPDVTIYKGTLSSGVEIAVASSAVTSSQNWSKNMETQFRKKIEMLSRVNHKNFVNLIGHCEENKPFTRMMVFEYAPNGTLFEHLHIREAEQLDWGMRMRIAMGIAYCLEHLHQLTPPIAYRNILSSSIYLTEDYAAKLSDLCFWTDVESTKKGSEATQLLETTSAYIKANVYSFGVLLFELITGRVPYAVENGLHEDWAAEYIKGQPLRDLVDASLNSLQANEIEKWTEVINGCVHPDPEKRPTMREVTTKLKEITAMGPDGATPKPSPLWWAEIEIMSTDLSSGLNP 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1237 707 PANTHER PROTEIN MALE DISCOVERER 2 1 700 - -
Ssu9g1237 707 MobiDBLite consensus disorder prediction 232 279 - -
Ssu9g1237 707 MobiDBLite consensus disorder prediction 300 342 - -
Ssu9g1237 707 MobiDBLite consensus disorder prediction 300 315 - -
Ssu9g1237 707 ProSiteProfiles Protein kinase domain profile. 411 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1237 707 Pfam Leucine rich repeat N-terminal domain 37 79 IPR013210 -
Ssu9g1237 707 Pfam Protein tyrosine and serine/threonine kinase 424 671 IPR001245 GO:0004672|GO:0006468
Ssu9g1237 707 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 1 700 - -
Ssu9g1237 707 MobiDBLite consensus disorder prediction 247 278 - -
Ssu9g1237 707 Gene3D Phosphorylase Kinase; domain 1 387 493 - -
Ssu9g1237 707 Gene3D Transferase(Phosphotransferase) domain 1 494 679 - -
Ssu9g1237 707 SUPERFAMILY L domain-like 38 194 - -
Ssu9g1237 707 Gene3D Ribonuclease Inhibitor 35 235 IPR032675 -
Ssu9g1237 707 SUPERFAMILY Protein kinase-like (PK-like) 395 671 IPR011009 -
Ssu9g1237 707 MobiDBLite consensus disorder prediction 316 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1237 Ssu-Chr9 45703494 45708951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1237 391 674 Receptor kinase-like Gene Family AT4G31110 34.098 1.15e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu9g1237 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1237 - - gmx:100814122 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1237 9 45703494 45708951 Ssu9g1237 9 45703494 45708951 ECH
Ssu6g2680 6 62258294 62265569 Ssu9g1237 9 45703494 45708951 ECH
Ssu9g1237 9 45703494 45708951 Ssu6g2680 6 62258294 62265569 PCT