Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1229 ATGGCCTCTGAACAACAACACTACCACTTTATTCAGTGGCACTTGGACAAGCTCAATGCTTCAACCTTCCACTCCTATAGCCAAAGCCTGTTCCTATTGCTATGGTTCATTGTCATTCTCATCTTTGTCCCCTCACTCTTCTTGTGCATCCATTTTTGTCGCCGTCGTTTCTCACAACAACAAAGCTCCACAACAACCGCAGTGGTCTCTCCCCTGCCTGATCACCAGTGGGTTGGAATTGACTTCACAAACCACACCATGGTACCATCTTTAACTAGCATGGTTGGTGCAGGTTTTGAGCAGGAGGAATGTTGCATTTGTTTGAGTCCTTTCCAAGGTGATGAAAAATTGAAGGTATTAGTTGAATGTGAACATGTCTTTCATTCTGAGTGCTTGGACATGTGGCTTAGTGCACATCCTACCTGCCCTCTCTGCAGGGCCTCTTTCCATGTTAGTGAAAATCTCAAGAAATAA 474 0.4473 MASEQQHYHFIQWHLDKLNASTFHSYSQSLFLLLWFIVILIFVPSLFLCIHFCRRRFSQQQSSTTTAVVSPLPDHQWVGIDFTNHTMVPSLTSMVGAGFEQEECCICLSPFQGDEKLKVLVECEHVFHSECLDMWLSAHPTCPLCRASFHVSENLKK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1229 157 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 151 IPR044675 -
Ssu9g1229 157 SMART ring_2 104 145 IPR001841 -
Ssu9g1229 157 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 151 - -
Ssu9g1229 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 154 IPR013083 -
Ssu9g1229 157 SUPERFAMILY RING/U-box 98 152 - -
Ssu9g1229 157 Pfam Ring finger domain 103 146 IPR001841 -
Ssu9g1229 157 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1229 Ssu-Chr9 45331115 45331588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1229 56 148 C3H Transcription Factor Family AT2G27940 38.710 1.78e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1229 - - gmx:102667569 254.603