Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1228 ATGCCAACCCAACCTGACTCCCCCAACACGTTGACCCAAATGTTTCAGAACATTTTCTCAGACAACAGTAGCATCATGCTTGCAGCCATCATTTCTCTCCTCCTAGTCATCCTCTTTGTCCTCCTTCTCCACCTCTATGCCAAGTGGTTCTTGGCCCAGGCTCAGGCACAATCGCGACGGCGCCGGCGCCGGCGAACGACGGTGACCGTCTCCGACGTCCTCGGCCCGGCAAGGCTCCACCACTTCCACAGCTTCAACATAGAAGACTCACCCCTCTCGACCAAAGGCCTCGATTCTTCCACCATTAGAGCAATTCCTCTCTTCATCTACGAGCACAACAAGGcccaagaagaagaagaacttgAATGCGTGATTTGTTTGAGCGCTTTTGAGGGTGGTGAAATGGGGAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGCTGGGTTCGCATTCCAATTGCCCTATTTGTAGAGCTCCGATTGTAGTTAGTGTTGTCGAGAACGATTCTAGGGTGGTGTCATCAAGTGATGGTGATGAACATGGTGGTGCTGATTGGGTTGAGATTGTGGTCGATGGTAGTTCTGAGATTAGAGAGAGTGAGCATGGGAATAGTGATGGTAATGGAGGAACTATCAGTGTTTCTGCGTCAGAAACTTCTTCCTCGTTTTTGGGGTGCTCTCGAGAGAATGCTTGGCAAGGTTTTCCCGTCTACTAA 738 0.4905 MPTQPDSPNTLTQMFQNIFSDNSSIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQSRRRRRRRTTVTVSDVLGPARLHHFHSFNIEDSPLSTKGLDSSTIRAIPLFIYEHNKAQEEEELECVICLSAFEGGEMGRCLPKCGHGFHVECIDMWLGSHSNCPICRAPIVVSVVENDSRVVSSSDGDEHGGADWVEIVVDGSSEIRESEHGNSDGNGGTISVSASETSSSFLGCSRENAWQGFPVY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1228 245 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Ssu9g1228 245 SUPERFAMILY RING/U-box 111 171 - -
Ssu9g1228 245 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 237 IPR044675 -
Ssu9g1228 245 PANTHER - 1 237 - -
Ssu9g1228 245 SMART ring_2 123 164 IPR001841 -
Ssu9g1228 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 170 IPR013083 -
Ssu9g1228 245 CDD RING-H2_EL5_like 122 165 - -
Ssu9g1228 245 Pfam Ring finger domain 122 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1228 Ssu-Chr9 45310835 45311572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1228 17 166 Rapid Response to Elicitors AT3G16720 38.411 3.44e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1228 - - pvu:PHAVU_006G070000g 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1228 9 45310835 45311572 Ssu9g1228 9 45310835 45311572 ECH
Ssu9g1228 9 45310835 45311572 Ssu6g2670 6 62075003 62075644 PCT