Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1223 ATGTCTTGTACCGTGGCAGTTCCCTCTTCCCCTGTGTTCTCTCTCttctacaacaacaacaacaacaattcttCCAATACCCCGGAACCTCTCATGCTCTCTCTTCCCATTCCCTCTACGACGCCGTCTTGTTCATCACCCTCTCCACCATCCTCTCCCCTCTTGAAGAGGAAGAGGCCCGCCAAACTCGACATTCCCGTCACTTCTCTCCCTTTTGGGCTCCCACCGGGGACACCGTCGCCGGCGAAAGACGCCGTCGTCGAGGTTGACGGACGCGGCTTTTCTGTGTACTGCAAAAGAGGAAGGAGACACCGCATGGAGGATCGTTACTCCGCTGCCGTTGACCTTCACGGTCAACCAAAACAgGCCTTTTTCGGCATATTTGATGGGCATGGGGGCACAAAGGCTTCGGAATTCGCTGCACATAACTTGGAAAAGAATGTGTTGGAAGAGGTGGTTCGGAGAGATGAAAGTGACATTGAGGAGGCAGTGAAGCATGGTTACCTGAACACAGATTCTGAATTCTTGAAAGAGGATCTTCACGGTGGTTCTTGCTGTGTGACAGCGTTGATTAGAAATGGTAACCTTGTTGTGTCCAATGCTGGTGATTGTCGTGCTGTGATTAGCAGAGGGGGTGTGGCTGAAGCCCTCACGTCTGATCACAAGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGACTCggggTGGCTATGTTAATGTGTGCCGTGGTGTTTGGAGGATCCAAGGGTCATTGGCTGTTTCTAGGGGAATTGGAGACAGAGACCTTAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTAGCAATCAGGAAGCAGTAGATATTGCTCGTCCTTTTTGTGTAGGGAACAATAGACAACAACCATTGCTGGCTTGTAAAAAACTCGTGGAGTTATCTGTGTTACGAGGCTCTGTGGATGATATAAGTGTTATGATTATCAAATTGCAAAACTATATTTGA 984 0.4746 MSCTVAVPSSPVFSLFYNNNNNNSSNTPEPLMLSLPIPSTTPSCSSPSPPSSPLLKRKRPAKLDIPVTSLPFGLPPGTPSPAKDAVVEVDGRGFSVYCKRGRRHRMEDRYSAAVDLHGQPKQAFFGIFDGHGGTKASEFAAHNLEKNVLEEVVRRDESDIEEAVKHGYLNTDSEFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHKPSREDERDRIETRGGYVNVCRGVWRIQGSLAVSRGIGDRDLKQWVIAEPETKVSNQEAVDIARPFCVGNNRQQPLLACKKLVELSVLRGSVDDISVMIIKLQNYI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1223 327 Pfam Protein phosphatase 2C 94 274 IPR001932 -
Ssu9g1223 327 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 3 275 - -
Ssu9g1223 327 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 274 326 - -
Ssu9g1223 327 Gene3D - 92 326 IPR036457 -
Ssu9g1223 327 SUPERFAMILY PP2C-like 94 325 IPR036457 -
Ssu9g1223 327 MobiDBLite consensus disorder prediction 27 41 - -
Ssu9g1223 327 ProSiteProfiles PPM-type phosphatase domain profile. 93 323 IPR001932 -
Ssu9g1223 327 SMART PP2C_4 83 321 IPR001932 -
Ssu9g1223 327 MobiDBLite consensus disorder prediction 27 59 - -
Ssu9g1223 327 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Ssu9g1223 327 PANTHER PROTEIN PHOSPHATASE 2C 3 275 IPR015655 GO:0004722|GO:0006470
Ssu9g1223 327 PANTHER PROTEIN PHOSPHATASE 2C 274 326 IPR015655 GO:0004722|GO:0006470
Ssu9g1223 327 CDD PP2Cc 92 323 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1223 Ssu-Chr9 45216481 45218115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1223 1 327 PP2C-type Phosphatase Gene Family AT2G30020 53.769 1.58e-128 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1223 K17506 - gmx:100813073 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1223 9 45216481 45218115 Ssu9g1223 9 45216481 45218115 ECH
Ssu6g2664 6 62005088 62007010 Ssu9g1223 9 45216481 45218115 ECH
Ssu9g1223 9 45216481 45218115 Ssu6g2664 6 62005088 62007010 PCT