Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1218 ATGGCGGTGGAGGGTGATGGTAATTCTCAGAGCAGGAGGCGTAAAAGAGGGTTTTCGAGAAAGCTTCAAGTCGGTGAAAAGGTGGAGGTGAGGAGTATGGAGGTGGGTTTTCAAGGATCATGGCACCCTGGGACAGTTATTCATTGTGAGAAGCTGAAGCGCCACGTGAGATATAAGAATGTTTTGGATGATGATGGGGTGAATTATCTTGAGGAGGTAGTGAGTGTTTCAAAAGCTTTGGATGGTGATACCGAACATGCAAACATCTACAGGCGTGCGTCCGTTAGGCCGGTGCCTCCTTTGGTTGATTTTGAGAAATGGGACCTTAAGTTTGGTCTGTGTGTTGATGTGAACTATCAGGAGGCTTGGTGGGAAGGTGTTATATTTGATCACTGTGTTGGAATGGAGAAGAGGAATGTGTTTTTCCCTGATTTGGGTGATGAAATGCAGGTTGGAATTCATCAGTTGCGGATTACTCAGGACTGGGATGAAGTTACAGAGGAGTGGGAGCAGCGAGGGAAGTGGGTGTTTCTTGACTTGGTTGAGGAGCAGGAGAAGAAATTGTTTGTTGCAGTTTCAGCTAAGCAAATTTGGTATGATGTACGCATAAAAAGGGAATTTGAGACGGTTAGAGAGTGGACAGTTAATGTGGAGTACTTGTGGAGAGATATGGTAATGGAGGTAGTTAATGACTACTTATCTCTTACCATACAAGAAGTTCTCTCAGTCTTAAACCTTCCCGGGAGTTTATCAAATGAAACACCAGAGCTGGAATCTGTTCAAGCTATGGCTAGTGTTGACTTAAGCACGACCTTGCCTGATAAGGAAATTGTTGTGCAGAAAGAACCTGTTCCTCCTGTTAAAGAGATCTTACCTGtgtttcaaaaagaaattagcCCCTATGGGGCTTGTGAAGTAGTTTCGGGTGCTAGCTGttttgaagaaagaagaaaacataGATCCTCAACTCATTTAAGGTCCTCCAACTATTGGAAACCTCTGAAGTTTTCTGAAGTTGAATTATGCCCTGATGCTGTTAAGGAATATCCACTAGCTTCCGATCGTGAAGCTAAGACATTGTGGaaggaaaaattacaaaaacatctTGTATATCTTGGATGGAAAATTGAGTGGTCAAATAGATTGAATATTAAACGTTACAGGTATAATGTGCCTGATAAACAGGGCCAAAAGTTTTACCTTTCACTCATTGAAGTTTGTAAAGCTATGGAAAGGGACCCCAACATGAACTCCTTGCTGTTCCAAAATGATCAGAGTATAATGCATCCTACAGTTGCTTGTCATCTTTCAGTTGTGCCTCTAAATCCGTCAGAAAAAATTCAGAATCCAGATACCTTTCCTGTGCCATCTTCTCCTGTTGAAGATGAAGTTGAAGATGTACCCGAGTTTTGTCCTCAAGCTGTTGTGCTGTATTATCACTCACATATATCCAAAAAGAATCgggctgataaaaaaaatggataccGAAAGCAAAGAAGCATCTGTTGGCAGAAGGATGGATTTTTGACTATCCACCTCCAACTAATAAGAAAAGGGGAATAA 1563 0.4018 MAVEGDGNSQSRRRKRGFSRKLQVGEKVEVRSMEVGFQGSWHPGTVIHCEKLKRHVRYKNVLDDDGVNYLEEVVSVSKALDGDTEHANIYRRASVRPVPPLVDFEKWDLKFGLCVDVNYQEAWWEGVIFDHCVGMEKRNVFFPDLGDEMQVGIHQLRITQDWDEVTEEWEQRGKWVFLDLVEEQEKKLFVAVSAKQIWYDVRIKREFETVREWTVNVEYLWRDMVMEVVNDYLSLTIQEVLSVLNLPGSLSNETPELESVQAMASVDLSTTLPDKEIVVQKEPVPPVKEILPVFQKEISPYGACEVVSGASCFEERRKHRSSTHLRSSNYWKPLKFSEVELCPDAVKEYPLASDREAKTLWKEKLQKHLVYLGWKIEWSNRLNIKRYRYNVPDKQGQKFYLSLIEVCKAMERDPNMNSLLFQNDQSIMHPTVACHLSVVPLNPSEKIQNPDTFPVPSSPVEDEVEDVPEFCPQAVVLYYHSHISKKNRADKKNGYRKQRSICWQKDGFLTIHLQLIRKGE 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1218 520 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 493 - -
Ssu9g1218 520 SMART agenet_At_2 107 164 IPR014002 -
Ssu9g1218 520 SMART agenet_At_2 20 103 IPR014002 -
Ssu9g1218 520 Pfam Agenet domain 25 100 IPR008395 -
Ssu9g1218 520 PANTHER PHD ZINC FINGER PROTEIN 9 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1218 Ssu-Chr9 45041783 45043837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1218 31 433 PHD Transcription Factor Family AT5G58610 34.834 7.35e-64 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1218 - - gmx:100814680 715.687