Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1212 ATGTCGATCCACTATTCCCCACCCCCGCCGGCCACCGTCGACTCCATCCGCCACTCCCTCTCCGACATCTGCGCCCCTCCGCCGGACCACCGTCCCTTCGACAGCCCCCGCCGCTTCGCTGCCTTCGCCAGCCGCCTCTCCCACGTGCTCCTCCCGCCGCTTCCGCACTCTCCACCCGTCCGCACCGCCCTCAAGGGACTCGCCGGCGAGCTCTCCAAGGCCGAGGAGACCGTCTCCGTCTACAACAACGGCAGCAAGATACTCGTCCTCATCAACTGCAAAACCCTCTGTTCATCCCTCCAGGAACGCGCCGTCGCCGTCGCCGGCTGGCTCGCCCTCCTCGCTTCCGCCCTCCCCGACGCCGGCGACGACGACCTCCGCAAGAAGGTCTCCGACCTCGCCAGGGACATGAAGCTCGCACAGTTCAAAGTCACAGAGAACGAAGAGAGGGTTTGGTGCACGCTGGAAAAGGAAGGGGAAGGGGAAGGGAGAGAAAGCAGCAAAGCGGTGCAGAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCGTGCTGAGTTTTGTAACCAAGTGAAGCTCTTCAAAGATGATCCTTTTAGATCCCATTCCGTGCCTGAGAGAAGGGTTTTGGTGTCCTTGGAGAGGATTCTTAGTAACTGGTCTGTGAAGCCTGTCACTGTGTCCCCCAATTGGGACTTTGAAATTGTTGAAGATGCTGCTGCTCCAGTGTTTCCATTTAAGAGTTTCCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAATCCTCTCAGGCCTATGAGAGGACTGCTATTGAGTACTGGTTTGAACGATGCATCCAAGATGACCGTGACCCCACCTGCCCAGTTACTGGCACGGTTCTTAAGTCATTGGAGCTGAAGCCCAATATTGGGCTGGCTGGGGCTATTGAAGAGTGGGTTGGCAGGGTTGTTGAGTATCAAATCAAATCTGCAGTGCAGTATCTGAGTGAGGAACCCCTGTCTGTTGACCATGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCACTAAAAGATACATAATCAGGAATGCTGGTGCTGTGCTGTTGATAGTGACTGTGCTGAGCAATAACTCTAAAACTATTGGCTCGCGATTGAGAAGCAAAGCTCTAATGACGTTACTGAGCATGGTCAAGGATGAAGAAAGCAGGAAAATAGTGCTTGAACTGGGTATCACTAGATTGGCTGTACATAGTCTTATTGGGAGCtctgagaaagagagagaatatgcTATAAAGTTATTACTAGAGTTCTGCAATGATGAAGATTGTTGCGTAAGAATTGCATCAGAAAAAGGTGCATTAGTTCTTCTCTCTAGTATAGCAGGAAATCTGGAGTATCCATCTTTGTCCAATTTAGCTGAGGAAGTCTTAAGGCAGATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATTTCACGGTTACATGATGGTTCTGATGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCAGAGTATTGGTCGAACTTCTGTCTAATCAAGAAGGAAGGGGACCAAGTCTGCAAGCATTGTATAACTTGTCAGGATTGGATGGCAATGCAACCATCCTTATTGAGTCTTCAGTCCTTCCATCTCTAATAGAAGTTCTATTTGATGACCAGGATCCATCATATGAGCTGAAATCATTAGCTGCTTCAACAATTGCAAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGACAAGAATGGAAACCCAATGCAGTCAGAAATTATTGTTTTCAGACTTTTGGGGCTTTTAAACTGTTTGCCCTCTCAGTGTCAAGTGACAGTTCTTCGCATTCTTTGTGGTATTACATCATCTCCTCAGGCATCAGAGTTAGTAGCAAGTCATATCATATCCGAGGGTGGCTTTAGAACGGTCATACCATTTCTTGAACATCCAGAAGTTGAACACAGAGTGTTTGCTTTTAAGCTTACAAGACTACTATCTGAATGGTTTAGTCAAGATATTGCAAATGAGTTGAGACTTTCAAACAAACTTTCAGTACTTAAAGAAAAACTGCTAAATAACCAATCTACAAGTGATGAGAGATCAGATGCAGCTCAGATACTTGCTAATCTTTCCCTCTCAGAAGGTGAAGTTCAGACACTTTTAGGAGGTGATTTTGTGGAATGGACTGCTGTTACTCTTAAGAACCAGCGGCGTGTTCCCAATGCAAGATCTTCGCATACTGCATCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACAAGGAACCTTGATCAACAAACTCTTAATATAGTTAGAGAAAACTGTCTTATGGCCATTTTCTGTGAGCAGCTGGATTACGCTTCAAAACCGAAGGTAAAACAACTCGCTGCCATTGGATTGAAAAACTTGTCAGAATTTGGAAGGTCAGTTACTGCTAGGGACTCTAAACCACCATCTTACGGAGGGTTCTGGTCTTCCCTTGTGCTCGTGTGTGGAAGAGCCGCTAGTCAACCTTCCACGTGCCCCGTTCACAACGGCCCGTGCGATAAAGATAGTCAGTTGTGCCTGCTGAAGAGCAACTGTATCAAGCCCCTGGTTGATATCCTCAATGACAATGACACTGATGTTCAGCTTGCCGCAGTGGATGCACTATCTACTCTAGCACTAGATTACACATCCCACGGTTTCAAAACAGTTGTTGATGAGCTTGAGCAATTGGGTGCAGTTGATTCTCTTGTCACTCTTTTTACAGAGGTTAGAACTGAGGAGCTTCGGGAGAAGACAATTTGGATAATAGAAAAGATAATGAGAGTGGAAAATATCAGCAATCGGCATGCACTCAATCATTCTCTTGTGAGAGGTTTGGTTGAGGCCTTTAAGCATGGGAATACCAACACAAGGAAACATGCTCAAGATGCTCTCACACACCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACACGAGCTCGAAGATAG 3120 0.4676 MSIHYSPPPPATVDSIRHSLSDICAPPPDHRPFDSPRRFAAFASRLSHVLLPPLPHSPPVRTALKGLAGELSKAEETVSVYNNGSKILVLINCKTLCSSLQERAVAVAGWLALLASALPDAGDDDLRKKVSDLARDMKLAQFKVTENEERVWCTLEKEGEGEGRESSKAVQSGIVMDLARALGFDPGDRAEFCNQVKLFKDDPFRSHSVPERRVLVSLERILSNWSVKPVTVSPNWDFEIVEDAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERTAIEYWFERCIQDDRDPTCPVTGTVLKSLELKPNIGLAGAIEEWVGRVVEYQIKSAVQYLSEEPLSVDHVERALDHVYKVSEEHPTKRYIIRNAGAVLLIVTVLSNNSKTIGSRLRSKALMTLLSMVKDEESRKIVLELGITRLAVHSLIGSSEKEREYAIKLLLEFCNDEDCCVRIASEKGALVLLSSIAGNLEYPSLSNLAEEVLRQMERVEDNVQCLAAAGRFGPLISRLHDGSDGVKIEMASLVGRMTLTNSCKEQIARQGARVLVELLSNQEGRGPSLQALYNLSGLDGNATILIESSVLPSLIEVLFDDQDPSYELKSLAASTIANIVSKPGHWELASADKNGNPMQSEIIVFRLLGLLNCLPSQCQVTVLRILCGITSSPQASELVASHIISEGGFRTVIPFLEHPEVEHRVFAFKLTRLLSEWFSQDIANELRLSNKLSVLKEKLLNNQSTSDERSDAAQILANLSLSEGEVQTLLGGDFVEWTAVTLKNQRRVPNARSSHTASGMQEGLIGLLLHFTRNLDQQTLNIVRENCLMAIFCEQLDYASKPKVKQLAAIGLKNLSEFGRSVTARDSKPPSYGGFWSSLVLVCGRAASQPSTCPVHNGPCDKDSQLCLLKSNCIKPLVDILNDNDTDVQLAAVDALSTLALDYTSHGFKTVVDELEQLGAVDSLVTLFTEVRTEELREKTIWIIEKIMRVENISNRHALNHSLVRGLVEAFKHGNTNTRKHAQDALTHLKQLSGVSGKTSSQTRARR 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1212 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 325 IPR013083 -
Ssu9g1212 1039 Gene3D - 888 1034 IPR011989 -
Ssu9g1212 1039 SUPERFAMILY ARM repeat 330 466 IPR016024 -
Ssu9g1212 1039 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1034 - -
Ssu9g1212 1039 ProSiteProfiles U-box domain profile. 249 329 IPR003613 GO:0004842|GO:0016567
Ssu9g1212 1039 Pfam U-box domain 254 323 IPR003613 GO:0004842|GO:0016567
Ssu9g1212 1039 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1034 - -
Ssu9g1212 1039 SUPERFAMILY RING/U-box 252 323 - -
Ssu9g1212 1039 SMART Ubox_2 253 322 IPR003613 GO:0004842|GO:0016567
Ssu9g1212 1039 Gene3D - 326 851 IPR011989 -
Ssu9g1212 1039 SUPERFAMILY ARM repeat 493 984 IPR016024 -
Ssu9g1212 1039 Pfam Armadillo/beta-catenin-like repeat 899 932 IPR000225 GO:0005515
Ssu9g1212 1039 SMART arm_5 570 613 IPR000225 GO:0005515
Ssu9g1212 1039 SMART arm_5 407 447 IPR000225 GO:0005515
Ssu9g1212 1039 SMART arm_5 532 569 IPR000225 GO:0005515
Ssu9g1212 1039 SMART arm_5 808 849 IPR000225 GO:0005515
Ssu9g1212 1039 SMART arm_5 940 981 IPR000225 GO:0005515
Ssu9g1212 1039 SMART arm_5 893 933 IPR000225 GO:0005515
Ssu9g1212 1039 SMART arm_5 362 406 IPR000225 GO:0005515
Ssu9g1212 1039 Coils Coil 474 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1212 Ssu-Chr9 44952470 44959448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1212 251 1028 U-box Gene Family AT1G20780 29.345 8.76e-86 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1212 - - ccaj:109816409 1798.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1212 9 44952470 44959448 Ssu9g1212 9 44952470 44959448 ECH