Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1210 ATGAAGCTCTCAGTCTCAACTAATTCTTCTCATGCATCCCCATCATCTTCATCCACCACAAGTTTGGACCCAATTATGTGCACCTCCAAAAGCACCACTTCAGGGTGTCTCACGGCCATCTTGCGCAAGATTCTTTGCTCTGATGGCCTTCCAAGAGACCAAAATAGAGAGCTTGACTCATCAAATGCAAGGTTGAGTACTTTCAAAGATCAAAACTTGAAGGCTAAGCAGAATGCCGAAACTGCTATCGCTGctgctactactactactactccAGGGATAGTGGCAAGGTTAATGGGTTTGGAATCAATTGAGATACCTTGTGGATCAAGACCAAGTTCACTTTCTCGTAGCAGATCCATGAATTCTGTGGACTATTTGGGAGAATGCAATGGAATGGAGGTTCTGCATAAGAGGGTTAAGTCCACACTGTCTTTTAGGGAGGCTCCAACTTTTCTTCTACATGAAAGTGAAAAGTTTTTGGTGCTTAGTTTTGAAGGTGGAAGTGAGAGTAGAGAATTCAAGTCCGGTGGGAGAAACAGAGAAACGGGTTGTGCGGAGTTGAAGCAAAAAGTGCGATCAGAGAGGGGTGAGTTGAgggaaaacaaaagagaaaaagtgtgTGATCAGAAGGTTTTGATTGAGAAGGGGAAACTTGGGCAAAAAAGGGTGTCTCATGTGTCTTGTGGGAATGTTGGAAATGATGGTAAACTTCAAGAAATCACCAACACTTTGCATCCATTCAAGGCTTCATCTGAAAAGAAGAAGTGTTTTGATTCTGAAGCAGTGAAATTGTCACAGAACAGGAAGTACAAGGAAGTTGTGGTTGGTGAAAAgcagaagaggaggaagaagaagaagaaaacaatttgTCACACTGAAAACAAGGTAGAAGTTGAATGCAAGTCAGAAGATTCAAGCCCAGTTTCTGTCCTTGATTTTGAGCGTGAAGCTTGTGGAACAGTTGGTTTGAGTTCAAGAAGAAAATTGTCACCAAAGCTTGAAAGTGATCAGCACCTTCTTGTGCATTCTGATGATAACTTGATGATTGATGAGAGGAAGGTTAAGGCAACTGACAACAACAAATATGAAGGgtcaaagaaaaaagagaagatcaACGGCCAGGAATATATAGATATTTGGGGTGAAGTTTGCAGAATAGTTGAGGATGAATTGGCTGCATCAAATCAGATGCATAGATGGACGAATAAACAAGGTGATTTAGGTAGTATAAGTTCAGATTTTGAGTCACAAATTTTTGATCACTTGTTAAATGAGCTTGTGGATCAACTTGCTGGCACCCACTGA 1308 0.3823 MKLSVSTNSSHASPSSSSTTSLDPIMCTSKSTTSGCLTAILRKILCSDGLPRDQNRELDSSNARLSTFKDQNLKAKQNAETAIAAATTTTTPGIVARLMGLESIEIPCGSRPSSLSRSRSMNSVDYLGECNGMEVLHKRVKSTLSFREAPTFLLHESEKFLVLSFEGGSESREFKSGGRNRETGCAELKQKVRSERGELRENKREKVCDQKVLIEKGKLGQKRVSHVSCGNVGNDGKLQEITNTLHPFKASSEKKKCFDSEAVKLSQNRKYKEVVVGEKQKRRKKKKKTICHTENKVEVECKSEDSSPVSVLDFEREACGTVGLSSRRKLSPKLESDQHLLVHSDDNLMIDERKVKATDNNKYEGSKKKEKINGQEYIDIWGEVCRIVEDELAASNQMHRWTNKQGDLGSISSDFESQIFDHLLNELVDQLAGTH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1210 435 PANTHER OS05G0128300 PROTEIN 1 433 - -
Ssu9g1210 435 Coils Coil 185 205 - -
Ssu9g1210 435 MobiDBLite consensus disorder prediction 1 23 - -
Ssu9g1210 435 Pfam DUF761-associated sequence motif 88 104 IPR032795 -
Ssu9g1210 435 PANTHER - 1 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1210 Ssu-Chr9 44882536 44884161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1210 29 434 TRM (TON1 Recruiting Motif) Superfamily AT5G58630 29.298 4.45e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1210 - - gmx:102660067 624.009