Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1209 ATGTGTAGTGGTTCCAAGAGGCAACCTTCTCAAAGTGGATTGATTATGGGGGATGAGTATGGAAGAGAAGAAGAGTTGCATCATAAAATTTCTGCTTTGCTTGAGTTTTCAGCGGCAGATGATGTAATAGGTTTCAAAGATGCTGTTGAAAAGGAGGGtcatgatgttgatgaggtggGGTTGTGGTATGGAAGGAGGGTTGGCTCAAAGGAAGTGGGTTTTGAAGAGAGGACCCCTCTTCTGATTGCTGCTATGTTTGGAAGCAAAAGTGTGTTATCTTATATTCTTGGGACGGGTCGTGTTGATATTAACCAGGCTTGTGGGTCAGATGGGGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCCTCCCTTGAAGTCATCAAGCTTTTGCTTGATGCATCGGCAGATGTTAATACGGTTGATGCCAATGGAAACAGCCTGTGGGACTTGGTTGTCTCCGTGTCTAGTGGTGTCTTCAATTCAAGAAAGAGGATACTACAAGCCATACTAGAAGGTGCAGATGGTATTGATGAGGCctttcttaaatttgatgaagatGTTGGGCAAATGGAGAAACAACAACAGCAAGATGTAGATACACTTCAGGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTATTGATCTCTCTCTTCCAGACATAAAAAATGGGATCTATGGGACAGATGAGTTCAGGATGTATACATTCAAAGTGAGGCCTTGTTCAAGAGCTTATTCTCATGATTGGACTGAGTGCCCTTTTGTTCATCCTGGGGAAAATGCAAGGCGCCGTGATCCAAGGAAATATCAATATAGCTGTGTACCTTGCCCTGAGTTTCGGAAGGGATCCTGCAGCAAGGGGGATGCCTGTGAATATGCACATGGTATTTTTGAGTGTTGGCTTCACCCTGCGCAATACAGAACACGGCTTTGCAAGGACGAGACAGGATGCACCAGAAGAGTTTGTTTCTTTGCTCACAAGCTAGAGGAGCTTCGCCCCGTGTATTCTTCCACTGGTTCTGCTATGCCTTCTTCTAGATCATATTTTGCTGGTACTTCTTCCCTGGACACTTTCACATTGGGCTCTCCATCTGCCTTGATACCACCTGCCTCAACCCTGCCTTTGACTCCATCCGGAGGATCTCCTCCTGTGGGTGGAACCATGTGGCACTCTCAGTCTCATGTTGCAGTCCCTACCCTTCGGCTGTCCCGAAGTAGATTGAGAACTGCACTAAATGCTAGAGATGTTGAATTAGACATTGAATTGCTTGGACTTGAAAATCATCGACTTATAATGCAGCAGCTGATGATGGAAGAGATGGCTGGTCTTTCATCCCCTTCTAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCGCGACCACACCGGGGAGTTAAATAGGCTTGCAGGAGTGAACCCTACTAACCTTGAAGACATTTTCGGATATCAGATACAATCCCCAACCGGAATCCAGGTGCATCAGAATGTGAACCAGCAACTGCGAGGCTATCCTTCCAACCTTTCCACTTCAAGTGTGATTGGATCACCATCATTCAGGGTTGATCCATCTGGGACAGCAGCCACAGTGGCTTTGAATCCAAGAAATGCTGCCTTTTCTAATCGGAGCCGGAGTTTTATTGAGCATAATATGGTTAACTGTGATTCTGAGTTTCCTTCTGTTGCTACCTCTACTGCTGTTGAGCCTTCTACCTTATCTGGTTGGAGTTCCCCCGATGGCAAGTTAGATTGGGCCATCTGTGGAGATGAACTAAATAAGCAGagcaattcttcttcttttggattttGA 1821 0.4426 MCSGSKRQPSQSGLIMGDEYGREEELHHKISALLEFSAADDVIGFKDAVEKEGHDVDEVGLWYGRRVGSKEVGFEERTPLLIAAMFGSKSVLSYILGTGRVDINQACGSDGATALHCAVAGGSAASLEVIKLLLDASADVNTVDANGNSLWDLVVSVSSGVFNSRKRILQAILEGADGIDEAFLKFDEDVGQMEKQQQQDVDTLQVSKDGTEKKDYPIDLSLPDIKNGIYGTDEFRMYTFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYQYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRRVCFFAHKLEELRPVYSSTGSAMPSSRSYFAGTSSLDTFTLGSPSALIPPASTLPLTPSGGSPPVGGTMWHSQSHVAVPTLRLSRSRLRTALNARDVELDIELLGLENHRLIMQQLMMEEMAGLSSPSNWKNSMPNSPSFRDHTGELNRLAGVNPTNLEDIFGYQIQSPTGIQVHQNVNQQLRGYPSNLSTSSVIGSPSFRVDPSGTAATVALNPRNAAFSNRSRSFIEHNMVNCDSEFPSVATSTAVEPSTLSGWSSPDGKLDWAICGDELNKQSNSSSFGF 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1209 606 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Ssu9g1209 606 Gene3D - 29 173 IPR036770 -
Ssu9g1209 606 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Ssu9g1209 606 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 20 606 - -
Ssu9g1209 606 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Ssu9g1209 606 Gene3D - 275 337 - -
Ssu9g1209 606 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Ssu9g1209 606 PANTHER UNKEMPT FAMILY MEMBER 20 606 IPR045234 -
Ssu9g1209 606 Pfam Ankyrin repeats (3 copies) 70 144 IPR002110 GO:0005515
Ssu9g1209 606 SUPERFAMILY Ankyrin repeat 72 150 IPR036770 -
Ssu9g1209 606 SMART ANK_2a 110 142 IPR002110 GO:0005515
Ssu9g1209 606 SMART ANK_2a 75 105 IPR002110 GO:0005515
Ssu9g1209 606 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Ssu9g1209 606 SMART c3hfinal6 274 300 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1209 Ssu-Chr9 44876366 44878186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1209 25 605 C2H2 Transcription Factor Family AT5G12850 41.167 2.12e-137 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu9g1209 Ank_2 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1209 - - gmx:100806121 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1209 9 44876366 44878186 Ssu9g1209 9 44876366 44878186 ECH
Ssu6g2645 6 61674685 61675602 Ssu9g1209 9 44876366 44878186 ECH
Ssu7g2631 7 52219868 52223606 Ssu9g1209 9 44876366 44878186 ECH