Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1205 ATGGGTCTTTTTGGGAAGACAGTTCCAAAAACTGCAGAAAACTTTCGAGCTCTTTGCACAGGGGAAAAGGGAACTGGTAAAGGTGGAAAGCCTCTCCATTATAAAGGTAGCTCATTCCATAGAATTATTCCTAGCTTTATGATCCAAGGAGGTGATTTTACACATGGCAATGGAATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAATTTCAAGTTAAAGCATACTGGACCAGGATTTCTATCAATGGCAAACGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAGCTGGTTGGATGGAAGGCATGTTGTTTTTGGTAAAGTTCTTTCCGGAATGGATGTTATTTACAAGATTGAAGCTGAAGGAAGGCAAAGTGGCACTCCCAAAAGCAAGGTTGTGATTGCTGACAGTGGCGAACTCCCTCTCTAA 459 0.4139 MGLFGKTVPKTAENFRALCTGEKGTGKGGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVIYKIEAEGRQSGTPKSKVVIADSGELPL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1205 152 Gene3D - 1 151 IPR029000 -
Ssu9g1205 152 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 152 - -
Ssu9g1205 152 SUPERFAMILY Cyclophilin-like 2 150 IPR029000 -
Ssu9g1205 152 PIRSF Peptidylpro_ismrse 1 151 IPR024936 GO:0003755
Ssu9g1205 152 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 34 51 IPR020892 GO:0003755|GO:0006457
Ssu9g1205 152 Coils Coil 152 152 - -
Ssu9g1205 152 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 149 IPR002130 GO:0000413|GO:0003755
Ssu9g1205 152 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 147 IPR002130 GO:0000413|GO:0003755
Ssu9g1205 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Ssu9g1205 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 3 18 IPR002130 GO:0000413|GO:0003755
Ssu9g1205 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 97 IPR002130 GO:0000413|GO:0003755
Ssu9g1205 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 97 109 IPR002130 GO:0000413|GO:0003755
Ssu9g1205 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 39 51 IPR002130 GO:0000413|GO:0003755
Ssu9g1205 152 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1205 Ssu-Chr9 44671882 44673790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1205 1 129 U-box Gene Family AT5G67530 46.923 5.78e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1205 K01802 - gmx:100792140 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1205 9 44671882 44673790 Ssu9g1205 9 44671882 44673790 ECH