Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1200 ATGTCACACCACACCATGGAGGAGGACTTGAACATCTTGGAGACGAACACTGAGCCTTGTCACAGCAATTCTACATGTGCAAAGGCACCACAACAGGCACAGAAACTTACATCTTCAATGGTAACAAAGAAGTGGCCATTTCCGGTCACAACAGTTCGTTTTCAAATGCTTAGGAATTTCGCAACCAATTTGCAAGAGGTCATTTTTGGCACTAAGCTTGCAGTGCTTTTTCCGGCTGTCCCTTTGGCTATTGTTGCAGATTTTTATAGCCTTGGAAGGCCTTGGATTTTTGCTTTGAGCCTACTTGGACTCACCCCGCTAGCTGAACGTGTCAGCTTTCTTACCGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGACTTCTGAATGCAACCTGTGGTAATGCAACCGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTGAAATTATCCCTGCTGGGTTCCATTCTCTCGAACCTTCTATTAGTTCTTGGAAGTTCACTTCTCTGTGGCGGCTTAGCCAACCTTAGGAAGGAGCAAATATATGACAGAAAACAGGCAGATGTAAACTCACTACTTTTGTTGCTGGGGTTGCTCTGCCATTTGTTGCCATTAATGTTCAGATATGCCTTAGCAGGGGGTTATCCTTCTATAGCCACTTCAACTCTTCAATTGTCTAGAGCAAGCAGCATTGTTATGCTTATAGCATATGCCGCATACATCTTCTTCCAATTAAAAACACATCGACAAATTTTTGATGCACAAGAGGAAGATGAAAATGAAGATGGAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTCGGTATGACACTTATCATTTCTCTGCTTTCTGAATATGTTGTTGCGACCATTGAGGGTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATCTTGTTACCAATTGTGGGGAACGCCGCAGAACATGCTGGCTCAATCATATTTGCCTTTAAGAACAAGTTGGACATATCGTTGGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACGGGGTGTCTTGCTTTGACAATTATTGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTTTCCTGTGTTACATTATCATTGCTGCATGCTTTTTTGTTCACAAAACTCCAGAGTCTCCACTAATCAATCAAGCATAG 1311 0.4211 MSHHTMEEDLNILETNTEPCHSNSTCAKAPQQAQKLTSSMVTKKWPFPVTTVRFQMLRNFATNLQEVIFGTKLAVLFPAVPLAIVADFYSLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLCGGLANLRKEQIYDRKQADVNSLLLLLGLLCHLLPLMFRYALAGGYPSIATSTLQLSRASSIVMLIAYAAYIFFQLKTHRQIFDAQEEDENEDGEKAVIGFWSAFTWLVGMTLIISLLSEYVVATIEGASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIEMDLDFNLLETGCLALTIIVTAFTLQDGTSHYMKGVVLFLCYIIIAACFFVHKTPESPLINQA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1200 436 Pfam Sodium/calcium exchanger protein 280 421 IPR004837 GO:0016021|GO:0055085
Ssu9g1200 436 Pfam Sodium/calcium exchanger protein 95 252 IPR004837 GO:0016021|GO:0055085
Ssu9g1200 436 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 28 430 IPR004713 GO:0006812|GO:0008324|GO:0016021
Ssu9g1200 436 Gene3D - 271 424 IPR044880 -
Ssu9g1200 436 Gene3D - 124 265 IPR044880 -
Ssu9g1200 436 TIGRFAM cax: calcium/proton exchanger 78 423 IPR004798 GO:0006816|GO:0015369
Ssu9g1200 436 PANTHER VACUOLAR CATION/PROTON EXCHANGER 28 430 - -
Ssu9g1200 436 TIGRFAM caca2: calcium/proton exchanger 59 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1200 Ssu-Chr9 44630871 44636617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1200 31 433 Antiporters AT2G38170 69.268 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1200 K07300 - gmx:100778821 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1200 9 44630871 44636617 Ssu9g1200 9 44630871 44636617 ECH
Ssu9g1200 9 44630871 44636617 Ssu6g2637 6 61515854 61520165 PCT