Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1197 ATGCAGAAAAATTCTCCTGGAAAATATCTTGGTATGGGAAAGGGCTCCTTTCAGGACTCTCTTAAAGCTTTGGAAGCTGATATTCAGTATGCTAATACCCTAGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCccctatttttctatttcttgttCAGTGGATGGATTATCGCCTGGCTGGTGCTCTGGGTTTGCTAAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGGCAATTTTACACGGTTATATTTCCTGCTTTATTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAATCTATGCTTGTAGATACCAAAGGAAGAGTGAGTTCAATGAGAGAAGACAATCTGAAATAGATATTGAAAGAGAAGACGAATGTGGAGTTTGCTTGGAGGTGAAAGCAAAAGTTGTGCTGCCCAATTGCTGCCACTATATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAATCAACTCTGGGGACCTTTGGATTTACACAGACAAGAGTGATATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGTTGCCTCTAATTGTTCCAGATCCCAGACATGTGTTCTATGATCCATTTCTAAGATGA 765 0.3922 MQKNSPGKYLGMGKGSFQDSLKALEADIQYANTLALGYPRDKDGGCFQMRISYSPAAPIFLFLVQWMDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYTVIFPALLQLEKGITDLEERKQKEIYACRYQRKSEFNERRQSEIDIEREDECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRINSGDLWIYTDKSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRHVFYDPFLR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1197 254 SUPERFAMILY RING/U-box 140 201 - -
Ssu9g1197 254 Pfam Zinc finger, C3HC4 type (RING finger) 155 201 - -
Ssu9g1197 254 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Ssu9g1197 254 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Ssu9g1197 254 PANTHER RING FINGER PROTEIN 41, 151 12 254 - -
Ssu9g1197 254 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 254 - -
Ssu9g1197 254 SMART ring_2 158 195 IPR001841 -
Ssu9g1197 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 216 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1197 Ssu-Chr9 44577870 44580902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1197 115 214 C3H Transcription Factor Family AT5G01960 26.000 5.65e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1197 - - gmx:100808567 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1197 9 44577870 44580902 Ssu9g1197 9 44577870 44580902 ECH