Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1193 ATGAAGAAAACACCAAGCCCCAGTTTGCAGCAGTCTAACCAAAGAAGAAAGAGTGTTGGTCTCCAAGATAGAGGTGCAGGCAATGGCAGGCAGAGTCACAATGTCGAGAAACATAGTGCTCTGACACATTTCAAGTCTTCTGTTAAGAAGTTTTTTACGTTGGTTCTCTCTGGGAAAAGAAACACAGCCTCAGAAGCAGTTGAAAGCGATGACAAAAAGAATACACACAAAGTTAGAGGGGTATCATCTTCCGCAGATTTATCATCTGATAGTTCTAAGAGTTCATCAAAATGGATGTTTTCTCATTCCTCTGCATCATCTGGCACTCTAAGTAGTCAGCTTGGAATGGGAAACTTCACCTTTGAGGAAATTTACAAGGCAACAGCAAAGTTCTCTCCAGAAAATAAGATTGGGGAAGGTGCGTTTGGAACAGTGTATAAGGGAAAGCTTTATGATGGAACCCTAGTGGCTGTAAAGCGTGCCAAGAAGGATTTACAAAACAAGAACTTAGCTGAGTtcaagaatgaaataaataccTTATCAAAAATTGAGCATATGAACCTTGTAAGGTGGTATGGGTATTTGGAGCATGGAGATGAAAAGATTATTGTTGTTGAATATGTTAATAATGGAACTCTTCGGGAACATTTAGATGGTTTTCGGGGAAATGGACTAGAAATTGGTGAGCGTCTGGACATAGCAATTGATGTAGCTCATGCAATTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGGGACATCAAAGCATCAAATATCTTAATCACTGATAAACTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCTCGGTTGGGTGCAGAAGACCCAGGTGCAACCCATATTTCAACTCAAATTAAAGGAACAGCTGGCTATATAGATCCTGATTACATGAGAACGCAGCATCTCTCTGAAAAGAGTGATGTCTATTCCTTCGGCGTGTTGCTCGTTGAAATGATGACAGGACGACATCCAGTTGAACCAAAGAGACCTCCCAGTGAGAGAGTTACAATTAAATGGGCAATGCAGATGTTGAAACAAGGAGAAATTGTGATTGCCATGGATCCTAGACTGAGGAGAAATCCAGCATCAAACAAGGCAGTGCAGAAGGTTCTCAAGCTAGCTTTCCAATGCCTTGCACCGGTGAGACGATTACGGCCATCTATGAAGAGCTGTGCAGAGGTTCTTTGGGACATCCGCAAAGATTTTAGAGAAAAAGCATCTTCTCACCGTCCTCGTGGTTCTCACCATTCTGCAAATTTCCCTCAAAGAGATGCTAGGAAGAATAGGCATATGACAGTTGGTATCGAAGATGGGGAAGGTCTGCTAGGTGCTTTTTCTGTTATGAACATGGCCACTTCAGCTATAACTGCTCTCGAAATGGTCATGGAATTGATCCAAAGAGACCATAATCTTCTTGATAGAATGGTGGAGCTACTTAATCCGACGTGTCTACCTGTTTATGTGAGGGAAGGGAATGAGCCTGATATTTTCTGGGATGCTCTCTGGGGAAAGGCAAAGTATCCAAGGGGCAAAGAAATTCAAGGATTCATAGATGATCCACATTTGTTTGCATTAGAAAAACACCCTTTTAAGAAAGGTGAAATGGCAGGGACGGCATGTCTAATTGATGGTTCTGTTTCTCGCGCTCATTTATTGGAATTTCAAATCAGGAGACTTCAAGGTATATTGCTTCTACAATTTGAAACTGTTCACGTtacatgtaataaataa 1758 0.4078 MKKTPSPSLQQSNQRRKSVGLQDRGAGNGRQSHNVEKHSALTHFKSSVKKFFTLVLSGKRNTASEAVESDDKKNTHKVRGVSSSADLSSDSSKSSSKWMFSHSSASSGTLSSQLGMGNFTFEEIYKATAKFSPENKIGEGAFGTVYKGKLYDGTLVAVKRAKKDLQNKNLAEFKNEINTLSKIEHMNLVRWYGYLEHGDEKIIVVEYVNNGTLREHLDGFRGNGLEIGERLDIAIDVAHAITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGAEDPGATHISTQIKGTAGYIDPDYMRTQHLSEKSDVYSFGVLLVEMMTGRHPVEPKRPPSERVTIKWAMQMLKQGEIVIAMDPRLRRNPASNKAVQKVLKLAFQCLAPVRRLRPSMKSCAEVLWDIRKDFREKASSHRPRGSHHSANFPQRDARKNRHMTVGIEDGEGLLGAFSVMNMATSAITALEMVMELIQRDHNLLDRMVELLNPTCLPVYVREGNEPDIFWDALWGKAKYPRGKEIQGFIDDPHLFALEKHPFKKGEMAGTACLIDGSVSRAHLLEFQIRRLQGILLLQFETVHVTCNK 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1193 585 PANTHER OS01G0253100 PROTEIN 1 445 IPR045271 GO:0004714|GO:0006468
Ssu9g1193 585 MobiDBLite consensus disorder prediction 63 98 - -
Ssu9g1193 585 SUPERFAMILY Protein kinase-like (PK-like) 109 406 IPR011009 -
Ssu9g1193 585 ProSitePatterns Protein kinases ATP-binding region signature. 137 163 IPR017441 GO:0005524
Ssu9g1193 585 Gene3D Phosphorylase Kinase; domain 1 90 207 - -
Ssu9g1193 585 Pfam Protein tyrosine and serine/threonine kinase 134 403 IPR001245 GO:0004672|GO:0006468
Ssu9g1193 585 MobiDBLite consensus disorder prediction 1 35 - -
Ssu9g1193 585 MobiDBLite consensus disorder prediction 64 79 - -
Ssu9g1193 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Ssu9g1193 585 Gene3D Transferase(Phosphotransferase) domain 1 208 428 - -
Ssu9g1193 585 ProSiteProfiles Protein kinase domain profile. 131 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1193 585 PANTHER OS02G0821400 PROTEIN 1 445 - -
Ssu9g1193 585 MobiDBLite consensus disorder prediction 1 41 - -
Ssu9g1193 585 MobiDBLite consensus disorder prediction 80 98 - -
Ssu9g1193 585 SMART serkin_6 131 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1193 Ssu-Chr9 44335199 44342535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1193 119 428 Receptor kinase-like Gene Family AT2G23450 43.312 1.81e-65 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Ssu9g1193 PK_Tyr_Ser-Thr 5.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1193 - - gmx:100819818 753.821