Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1190 ATGTTTTTCAAACCAAACCGTGGTGTTAACCGCCACCAACCCCTCCTCACCCTTATCCAACTACTCAACAACCTAATCAAGCCAATAAGAGCCTGGTTCCAGCTACAGAATTTGTTAAAGAGAAAAACCTCACAATTCCGCTGTGGTATATGTTTTGATTACAAACCAGTGTCTGATATGTTCAAAAAGGGTAAGTGTAACCACCCCTTTTGCACTGACTGCATGTCCAAGCACGTGGCTACTCAAATACACCAAAATATTCTCAAGGTGATTTGTCCAAACCCAAACTGTTCTGTGGAATTGAAGCCTGAATATTTGCACACCATTTTGCCTAGTGAAGTAATTGTTAGATGGGAATCTGTGAGATGCGAGTCTTTGATTGATGGGTCGGAAAAGATTTACTGCCCCTTTAGGGATTGTTCTGTTTTGTTGGTGGATGATGGAAGAGAAGTTGTGACCAGTGCTGAGTGCCCCTCTTGTCACAGGCTATTTTGTGCACAGTGTAGGGTTCCTTGGCATGGAAGGATGACTTGTAAGGAATTCCAAAGGTCGAAAAGGAACAAAGGAGAAAAAGAGTTGGATAACAAGTTTTTCAAGTTGGCCAAAGAGAAAAAATGGCAGAAATGTCCCAATCCCAATTGCACTATGTATGTCCAAAGACGAGATGGATGTGAACACATTACTTGCAGGTGTGGATGCAACTTCTGCTACAACTGTGGGGAGATTTGGAAGTTTGGACATCAATGCAAGAAGCGTCAGTCCACATGGAACTGGAACTGGTTACAATTgacaagaaataaaagattttga 810 0.4136 MFFKPNRGVNRHQPLLTLIQLLNNLIKPIRAWFQLQNLLKRKTSQFRCGICFDYKPVSDMFKKGKCNHPFCTDCMSKHVATQIHQNILKVICPNPNCSVELKPEYLHTILPSEVIVRWESVRCESLIDGSEKIYCPFRDCSVLLVDDGREVVTSAECPSCHRLFCAQCRVPWHGRMTCKEFQRSKRNKGEKELDNKFFKLAKEKKWQKCPNPNCTMYVQRRDGCEHITCRCGCNFCYNCGEIWKFGHQCKKRQSTWNWNWLQLTRNKRF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1190 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 129 IPR013083 -
Ssu9g1190 269 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 34 250 IPR031127 GO:0004842|GO:0016567
Ssu9g1190 269 SUPERFAMILY RING/U-box 128 184 - -
Ssu9g1190 269 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Ssu9g1190 269 ProSiteProfiles Zinc finger RING-type profile. 48 93 IPR001841 -
Ssu9g1190 269 Pfam IBR domain, a half RING-finger domain 200 249 IPR002867 -
Ssu9g1190 269 Pfam IBR domain, a half RING-finger domain 121 178 IPR002867 -
Ssu9g1190 269 ProSiteProfiles TRIAD supradomain profile. 44 259 IPR044066 -
Ssu9g1190 269 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 34 250 - -
Ssu9g1190 269 SUPERFAMILY RING/U-box 197 252 - -
Ssu9g1190 269 SUPERFAMILY RING/U-box 44 127 - -
Ssu9g1190 269 SMART ibrneu5 116 178 IPR002867 -
Ssu9g1190 269 SMART ibrneu5 191 249 IPR002867 -
Ssu9g1190 269 Gene3D - 176 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1190 Ssu-Chr9 44309828 44311047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1190 15 240 C3H Transcription Factor Family AT2G19610 29.114 7.66e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1190 K11975 - gmx:102663173 311.612