Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1189 ATGTTCAAAAAGGGTAAGTGTAACCATCCCTTTTGCACTGACTGCATATCCAAACACGTGGCTACTCAAATACACCAAAATATTCTCAAGGTGATTTGTCCAAACCCAAACTGTTCTGTGGAATTGAAGCCTGAATATTTGCACACCATTTTGCCTAGTGAGGTAATTGTTAGATGGGAATCTGCGAGATGCGAGTCTTTGATTGTTGGGTCTGAAAAGAGTTACTGTCCCTTTAAGGATTGTTCTGTTTTGTTGGTGAATGATGGAAGAGAAGTTGTGACCAGTGCTGAGTGTCCCTCTTGTCACAGGCTATTTTGTGCACAGTGTAGGGTTCCTTGGCATGGAAGGATGACCTGTAAGGAATTCCAAAGGTCGAAAaggaataaagaagaaaaagagttgGATAACAAGTTTTTCAAGTTGGCCAAAGAGAAAAATTGGCAGAAATGTCCCAATCCCAAATGCACTATGTATGTCCAAAGACGAGGTGGATGTGAACACATTGCTTGCAGGTGTGGATGCAACTTCTGCTACAACTGTGGGGAGAATTGGAAGTTTGGACATCTATGCAAGAAGCTTCGGTCCGCATGA 591 0.4112 MFKKGKCNHPFCTDCISKHVATQIHQNILKVICPNPNCSVELKPEYLHTILPSEVIVRWESARCESLIVGSEKSYCPFKDCSVLLVNDGREVVTSAECPSCHRLFCAQCRVPWHGRMTCKEFQRSKRNKEEKELDNKFFKLAKEKNWQKCPNPKCTMYVQRRGGCEHIACRCGCNFCYNCGENWKFGHLCKKLRSA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1189 196 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 190 - -
Ssu9g1189 196 SUPERFAMILY RING/U-box 136 190 - -
Ssu9g1189 196 ProSitePatterns Zinc finger RING-type signature. 7 16 IPR017907 -
Ssu9g1189 196 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 190 IPR031127 GO:0004842|GO:0016567
Ssu9g1189 196 SUPERFAMILY RING/U-box 69 125 - -
Ssu9g1189 196 Gene3D - 116 194 - -
Ssu9g1189 196 SMART ibrneu5 57 119 IPR002867 -
Ssu9g1189 196 SMART ibrneu5 132 190 IPR002867 -
Ssu9g1189 196 ProSiteProfiles TRIAD supradomain profile. 1 196 IPR044066 -
Ssu9g1189 196 SUPERFAMILY RING/U-box 4 66 - -
Ssu9g1189 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 70 IPR013083 -
Ssu9g1189 196 Pfam IBR domain, a half RING-finger domain 69 119 IPR002867 -
Ssu9g1189 196 Pfam IBR domain, a half RING-finger domain 140 189 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1189 Ssu-Chr9 44306030 44306745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1189 2 181 C3H Transcription Factor Family AT2G19610 30.366 2.24e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1189 K11975 - gmx:102663173 288.115