Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1184 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCATCACCTTACATGTACAACTCCAATTGGCTTCTTGATGATAACAGGAACAACATCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAAAGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGATTTGGAAGCAGATGTTTGTAACATAGAAGCTGGCTTGATCCCAATTCCAGGCTACAGTACCACCTCACCCTTCACCTTAGACTGGGTGAACACTCCTGGCTATGATGGCTTCAAAGGACTCACTCCCAAGAGATCCTCCTCAGGAGGCAGACCTCCTGAtcaagaaaggaagaaaggtGTGCCATGGACTGAAGAGGAACACAAATTGTTTCTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATATCGCGCAATTTTGTGATTACTCGAACGCCAACTCAGGTTGCTAGCCATGCTCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATAACAACAGTTAATCTCACAGAAACCACCAGAACTTCTCCTTCAGAAGACAGCAAGAGATCCACTTCACCACAGCCTTCAATGATGCTCTCACACCAGCAGCCGACTTCTAGCGCCACCTCATCTGGAGTGAATTTTCAGTGGGTTAATCAGCCAAATGCAGGAGTAGCTATGGCACTCAATCCTGCACATGAACAAGTGTTCATTGCTCCTTATGGCCTTAACTCTTATGGGTTCAAGGTGCAGGGCCAAAATCTGCACAGAAGTTCTCTTCATGAGTCTTCTTACTTAGGACCTCAGACACAAAACATGGTTTTCCAAATGCAACCCTCCCAACACTATTCCCATGCATga 948 0.4578 MKWEMEILPPASPYMYNSNWLLDDNRNNIKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKDLEADVCNIEAGLIPIPGYSTTSPFTLDWVNTPGYDGFKGLTPKRSSSGGRPPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSPSEDSKRSTSPQPSMMLSHQQPTSSATSSGVNFQWVNQPNAGVAMALNPAHEQVFIAPYGLNSYGFKVQGQNLHRSSLHESSYLGPQTQNMVFQMQPSQHYSHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1184 315 MobiDBLite consensus disorder prediction 114 136 - -
Ssu9g1184 315 MobiDBLite consensus disorder prediction 192 242 - -
Ssu9g1184 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Ssu9g1184 315 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Ssu9g1184 315 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 289 IPR043363 -
Ssu9g1184 315 SUPERFAMILY Homeodomain-like 131 184 IPR009057 -
Ssu9g1184 315 Gene3D - 24 90 - -
Ssu9g1184 315 SMART sant 27 79 IPR001005 -
Ssu9g1184 315 SMART sant 133 183 IPR001005 -
Ssu9g1184 315 Gene3D - 135 185 - -
Ssu9g1184 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Ssu9g1184 315 SUPERFAMILY Homeodomain-like 30 84 IPR009057 -
Ssu9g1184 315 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Ssu9g1184 315 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Ssu9g1184 315 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 289 - -
Ssu9g1184 315 CDD SANT 30 76 IPR001005 -
Ssu9g1184 315 CDD SANT 136 181 IPR001005 -
Ssu9g1184 315 MobiDBLite consensus disorder prediction 198 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1184 Ssu-Chr9 44216496 44217845 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g1184 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1184 - - gmx:100784163 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1184 9 44216496 44217845 Ssu9g1184 9 44216496 44217845 ECH
Ssu9g1184 9 44216496 44217845 Ssu6g3002 6 68825856 68827288 ECH
Ssu9g1184 9 44216496 44217845 Ssu4g2324 4 55633064 55634602 ECH
Ssu6g2614 6 61232046 61233361 Ssu9g1184 9 44216496 44217845 ECH
Ssu3g1163 3 27659451 27660840 Ssu9g1184 9 44216496 44217845 ECH
Ssu4g2324 4 55633064 55634602 Ssu9g1184 9 44216496 44217845 ECH