Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1175 ATGGCATCCATTGCCACCTTCTTCAACAAGTTCCTCTACCTCCTCATCCTCTTGCTCCACCTCGGCTGCTTCATCTTCACCACCGGAAAACACGCGCCACCGTCAAAGAAACGCAAAATCTCACCTTTATCCCAACCCTCCTCCCCTTCGCACCCCAAATTCAAAACCCACAAAGCCCTTTCCTCTTCTTGGCATTTCATCAAGCACCTCTTCTCCACCAAGTCCTGCAAAACCCCCACCACCGCCACATCCCCTCAATCCACCACCACCGCCGCCGCCACAGGAGCAGCACATTCCGTAAGAACCTCCCACCAATCCCTCATCTCACTAACACAACCCGACCCGGACAGAAACCCGACCGGGTCGTGCCCGGAATCCGACATCGCCGCCGACGCCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAACCCCACCTCCTCGAAACCCACCAGGCCCTCAAACACGCGGTTTCGGACCTACCCGGATCCGACCCGGGTCACAACATCGTCCAAATCATCTTCAAATCGGGCTGGCCCGAATCCAAACCGTTCCCGAACGTGACCCGCGTCCTCAAGATCCACAACAGCCCCAAGATCCTCGCCAAGTTCGAGGAGTACCGCGATGCCGTGAAGGCCAAGGCGGCGCGTCACGGCCTCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGCAACGAGCTCATGCGCTTCCACTGCTCCACGTTCCTGTGCGACCTGGGACGCGACGGGGATTCCTCGATTTGTTCGCAGCAGTTTTGTAACATCTGCGGGATTATTAAGTCCGGGTTCTCGCCCAAGCTCGACGGGATCGCCACGCTGTCCACCAGCTGGCGGGCACACGTGGCGATTCCCGATGACGTGGAGCGCGAGTTCCGCTTCATGAACGTGAAGCGGGCCATGCTCGTGTGTCGGGTGATCGCGGGCCGGGTTGGGTCGGATTCGGACGAGGCCGAGAAGGAGGATGGGGGTTTTGATTCCGTGATGGCGAGGGCGGAGACTGGAGTTTACACCCGGCTTGATGAGGAGGAGCTGTTGGTGTTTAATCCTAGGGCTGTGCTCCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1146 0.5925 MASIATFFNKFLYLLILLLHLGCFIFTTGKHAPPSKKRKISPLSQPSSPSHPKFKTHKALSSSWHFIKHLFSTKSCKTPTTATSPQSTTTAAATGAAHSVRTSHQSLISLTQPDPDRNPTGSCPESDIAADANLFFPLRNDIFPCTACGEIFQKPHLLETHQALKHAVSDLPGSDPGHNIVQIIFKSGWPESKPFPNVTRVLKIHNSPKILAKFEEYRDAVKAKAARHGLLTRRRDERCIADGNELMRFHCSTFLCDLGRDGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFRFMNVKRAMLVCRVIAGRVGSDSDEAEKEDGGFDSVMARAETGVYTRLDEEELLVFNPRAVLPCFVIVYSV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1175 381 MobiDBLite consensus disorder prediction 76 124 - -
Ssu9g1175 381 Gene3D - 167 380 - -
Ssu9g1175 381 MobiDBLite consensus disorder prediction 40 55 - -
Ssu9g1175 381 MobiDBLite consensus disorder prediction 31 55 - -
Ssu9g1175 381 SUPERFAMILY ADP-ribosylation 170 380 - -
Ssu9g1175 381 PANTHER NUCLEIC ACID BINDING PROTEIN 3 380 - -
Ssu9g1175 381 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 380 - -
Ssu9g1175 381 MobiDBLite consensus disorder prediction 76 119 - -
Ssu9g1175 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 167 IPR013087 -
Ssu9g1175 381 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1175 Ssu-Chr9 44102431 44103576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1175 64 381 C2H2 Transcription Factor Family AT2G29660 54.878 5.57e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu9g1175 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1175 - - gmx:100785244 634.795