Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1173 ATGAAAGGCATaggaggtggaggtggtggtgCCATTATTCCAATTCATGGGTGTGAAAATCTAAGGGTCACTAACCCTTCCATGTGTTCAGCTGGTCCTCCTTTGACAGCCATAGACAGGTTTTTGTGGGGTCAGCAACAAAGCCACTTCGCTCAGAAGCAACAGCCACAGAACGTTGCAAACAATGGCCATGCAAATGTTTTGGATGGTTTTGCTTGTTCTGGTGGCTCAAACTACAAGATTCTGTGGCCTAATAGTGCTCAAGAAGTAAGTTTTGTTGAACAGCTTTTAGCAAATGAAGAGGCTCTGAATTGGACACAACAAGTCCACACACTGTGCTTGAAAGAGGATGTGCATGTTTTGGGGAAGAATGCCAAAGTGGTGGGACGCAGACCTAAGAAAGGGTCTTCTGTGCCTTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAACTGTTAAAGTTGGTGAAGCAACATGGTGTAAGAAAATGGTCTCAGATAGCTGAGAAGTTGGATGGAAGGGCTGGCAAGCAATGTCGAGAGAGATGGCATAATCATCTGCGGCCTGACATCAAGAAAGATAGTTGGAGTGAGGAAGAAGAGAGGATATTAGTAGAAACTCATGCCAAGATTGGAAACCGTTGGGCAGAGATAGCAAAGCGCATTCCAGGAAGGACAGAAAATGCCATAAAGAACCATTGGAATGCCACTAAAAGGAGGCAAAACTCAAGGAGAAAGAACAAAAGGGCAGGAAACTCAAATGGAAAGCCACAGCCCTCTATACTCCAAGACTACATCAGAAGCTTGACTCCCACCAACACTACTACGACTACCACTCCCTCTGTGGAACCACAACAGCACCTTGCTTTGCCACAACTCTCTGATTCTGTTACCAATGAAAACTCCCCATCATCAACACTAATGGCTGACTCATATGATGATGAGATGCTCTTCATGCAACAACTTTTCAAGGAGAATGCCAATGTTGAATCTGTTAAGCACTCCAAGAACAATAGCTCTTCAACCTCCTTGGATTGTTATCATCAAACTAATAATGGTGGTCAGCTTCTCACTGATAATGTCACTCCATGTGGGTTTGTTCATTCCAACCCAAACACAAATAACTCACACAATAACATGTGCTTGGATGAGAGTCTCTTCATCCCTAGAAAGACTCCCACTCCCATGATCAACTACCTTGATTGTGATGTCTATCTTTCTCACTTGCTGAATGGAACTGCTGGTTCATCATTGTGCTGTAACTATGGGATTCACAACCAGAGTATGGAGTTGCAGCAGGTGAATCAAGATTGGTtacaagaaaagagagagatggatATGATAGAGTTGGTTTGTTCTACTCAGTTTTTGCACCAGCAAGATTAA 1389 0.4212 MKGIGGGGGGAIIPIHGCENLRVTNPSMCSAGPPLTAIDRFLWGQQQSHFAQKQQPQNVANNGHANVLDGFACSGGSNYKILWPNSAQEVSFVEQLLANEEALNWTQQVHTLCLKEDVHVLGKNAKVVGRRPKKGSSVPLIKGQWTDEEDRKLLKLVKQHGVRKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHAKIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSRRKNKRAGNSNGKPQPSILQDYIRSLTPTNTTTTTTPSVEPQQHLALPQLSDSVTNENSPSSTLMADSYDDEMLFMQQLFKENANVESVKHSKNNSSSTSLDCYHQTNNGGQLLTDNVTPCGFVHSNPNTNNSHNNMCLDESLFIPRKTPTPMINYLDCDVYLSHLLNGTAGSSLCCNYGIHNQSMELQQVNQDWLQEKREMDMIELVCSTQFLHQQD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1173 462 Gene3D - 195 261 - -
Ssu9g1173 462 MobiDBLite consensus disorder prediction 238 252 - -
Ssu9g1173 462 SMART sant 141 190 IPR001005 -
Ssu9g1173 462 SMART sant 193 241 IPR001005 -
Ssu9g1173 462 MobiDBLite consensus disorder prediction 227 263 - -
Ssu9g1173 462 Pfam Myb-like DNA-binding domain 145 202 - -
Ssu9g1173 462 PANTHER MYB PROTEIN-RELATED 48 416 - -
Ssu9g1173 462 SUPERFAMILY Homeodomain-like 139 235 IPR009057 -
Ssu9g1173 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 243 IPR017930 -
Ssu9g1173 462 CDD SANT 196 239 IPR001005 -
Ssu9g1173 462 PANTHER MYB TRANSCRIPTION FACTOR 48 416 - -
Ssu9g1173 462 ProSiteProfiles Myb-like domain profile. 189 239 IPR001005 -
Ssu9g1173 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 192 IPR017930 -
Ssu9g1173 462 ProSiteProfiles Myb-like domain profile. 142 188 IPR001005 -
Ssu9g1173 462 Gene3D - 141 193 - -
Ssu9g1173 462 CDD SANT 145 188 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1173 Ssu-Chr9 44060327 44063029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1173 31 455 MYB Transcription Factor Family AT5G58850 39.783 1.11e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g1173 Myb_DNA-bind_6 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1173 K09422 - gmx:100786295 585.874